CoreSequence.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef BPP_SEQ_CORESEQUENCE_H
#define BPP_SEQ_CORESEQUENCE_H
 
 
// From the STL:
#include <string>
#include <vector>
 
#include <Bpp/Clonable.h>
#include "CoreSymbolList.h"
#include "Commentable.h"
 
namespace bpp
{
class CoreSequenceInterface :
  public virtual CruxSymbolListInterface,
  public virtual Commentable
{
public:
 
public:
  CoreSequenceInterface() {}
 
  virtual ~CoreSequenceInterface() {}
 
public:
  CoreSequenceInterface* clone() const override = 0;
 
  virtual const std::string& getName() const = 0;
 
  virtual void setName(const std::string& name) = 0;
  virtual void setToSizeR(size_t newSize) = 0;
 
  virtual void setToSizeL(size_t newSize) = 0;
 
};
 
 
class AbstractCoreSequence :
  public virtual CoreSequenceInterface,
  public SimpleCommentable
{
private:
  std::string name_;
 
public:
  AbstractCoreSequence(const std::string& name) :
    SimpleCommentable(),
    name_(name) {}
 
  AbstractCoreSequence(const std::string& name, const Comments& comments) :
    SimpleCommentable(comments),
    name_(name) {}
 
  AbstractCoreSequence() :
    SimpleCommentable(),
    name_() {}
 
  AbstractCoreSequence(const AbstractCoreSequence& s) :
    Commentable(s),
    name_(s.name_)
  {}
 
  AbstractCoreSequence& operator=(const AbstractCoreSequence& s)
  {
    SimpleCommentable::operator=(s);
    name_ = s.name_;
    return *this;
  }
 
  AbstractCoreSequence(const CoreSequenceInterface& s) :
    SimpleCommentable(s.getComments()),
    name_(s.getName())
  {}
 
  AbstractCoreSequence& operator=(const CoreSequenceInterface& s)
  {
    SimpleCommentable::setComments(s.getComments());
    name_ = s.getName();
    return *this;
  }
 
  virtual ~AbstractCoreSequence() {}
 
public:
  virtual AbstractCoreSequence* clone() const override = 0;
  const std::string& getName() const override { return name_; }
 
  void setName(const std::string& name) override { name_ = name; }
};
} // end of namespace bpp.
#endif // BPP_SEQ_CORESEQUENCE_H