Dcse.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1

#ifndef BPP_SEQ_IO_DCSE_H
#define BPP_SEQ_IO_DCSE_H


#include "../Container/AlignedSequenceContainer.h"
#include "../Container/SequenceContainer.h"
#include "../Sequence.h"
#include "AbstractIAlignment.h"

namespace bpp
{
class DCSE :
  public AbstractIAlignment2
{
public:
  DCSE() {}
  virtual ~DCSE() {}

public:
  void appendAlignmentFromStream(std::istream& input, SequenceContainerInterface& sc) const override;
  std::unique_ptr<SequenceContainerInterface> readSequences(std::istream& input, std::shared_ptr<const Alphabet> alpha) const override
  {
    return readAlignment(input, alpha);
  }

  std::unique_ptr<SequenceContainerInterface> readSequences(const std::string& path, std::shared_ptr<const Alphabet> alpha) const override
  {
    return readAlignment(path, alpha);
  }
  const std::string getFormatName() const override;

  const std::string getFormatDescription() const override;
};
} // end of namespace bpp.
#endif // BPP_SEQ_IO_DCSE_H