ISequenceStream.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef BPP_SEQ_IO_ISEQUENCESTREAM_H
#define BPP_SEQ_IO_ISEQUENCESTREAM_H
 
#include <Bpp/Exceptions.h>
 
#include "../Alphabet/Alphabet.h"
#include "../Sequence.h"
#include "../SequenceWithQuality.h"
#include "../ProbabilisticSequence.h"
#include "IoSequenceStream.h"
 
namespace bpp
{
template<class SequenceType>
class TemplateISequenceStream : public virtual IOSequenceStream
{
public:
  TemplateISequenceStream() {}
  virtual ~TemplateISequenceStream() {}
 
public:
  virtual bool nextSequence(std::istream& input, SequenceType& seq) const = 0;
};
 
using ISequenceStream = TemplateISequenceStream<Sequence>;
using ISequenceWithQualityStream = TemplateISequenceStream<SequenceWithQuality>;
using IProbabilisticSequenceStream = TemplateISequenceStream<ProbabilisticSequence>;
} // end of namespace bpp.
#endif // BPP_SEQ_IO_ISEQUENCESTREAM_H