NucleicAlphabetState.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1

#ifndef BPP_SEQ_ALPHABET_NUCLEICALPHABETSTATE_H
#define BPP_SEQ_ALPHABET_NUCLEICALPHABETSTATE_H


// From the STL
#include <string>
#include <bitset>

namespace bpp
{
class NucleicAlphabetState : public AlphabetState
{
private:
  int binCode_;

public:
  NucleicAlphabetState(int num, const std::string& letter, unsigned char code, const std::string& name) :
    AlphabetState(num, letter, name), binCode_(code) {}

  // Class destructor
  virtual ~NucleicAlphabetState() {}

public:
  NucleicAlphabetState* clone() const
  {
    return new NucleicAlphabetState(*this);
  }
  int getBinaryCode() const { return binCode_; }
  void setBinaryCode(int code) { binCode_ = code; }
};
}
#endif // BPP_SEQ_ALPHABET_NUCLEICALPHABETSTATE_H