OSequenceStream.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef BPP_SEQ_IO_OSEQUENCESTREAM_H
#define BPP_SEQ_IO_OSEQUENCESTREAM_H
 
#include <Bpp/Exceptions.h>
 
#include "../Alphabet/Alphabet.h"
#include "../Sequence.h"
#include "IoSequenceStream.h"
 
namespace bpp
{
template<class SequenceType>
class TemplateOSequenceStream :
  public virtual IOSequenceStream
{
public:
  TemplateOSequenceStream() {}
  virtual ~TemplateOSequenceStream() {}
 
public:
  virtual void writeSequence(std::ostream& output, const SequenceType& seq) const = 0;
};
 
using OSequenceStream = TemplateOSequenceStream<Sequence>;
using OSequenceWithQualityStream = TemplateOSequenceStream<SequenceWithQuality>;
using OProbabilisticSequenceStream = TemplateOSequenceStream<ProbabilisticSequence>;
} // end of namespace bpp.
#endif // BPP_SEQ_IO_OSEQUENCESTREAM_H