bpp::AbstractOProbabilisticSequence Class Reference

Partial implementation of the OProbabilisticSequence interface. More...

#include <Bpp/Seq/Io/AbstractOSequence.h>

Inheritance diagram for bpp::AbstractOProbabilisticSequence:

Collaboration diagram for bpp::AbstractOProbabilisticSequence:

Public Member Functions
	AbstractOProbabilisticSequence ()
virtual	~AbstractOProbabilisticSequence ()
const std::string	getDataType () const
virtual const std::string	getFormatName () const=0
virtual const std::string	getFormatDescription () const=0
OProbabilisticSequence methods:
void	writeSequences (std::ostream &output, const ProbabilisticSequenceContainerInterface &psc) const override=0
	Write a container to a stream. More...
void	writeSequences (const std::string &path, const ProbabilisticSequenceContainerInterface &psc, bool overwrite=true) const override
	Write a container to a file. More...

Detailed Description

Partial implementation of the OProbabilisticSequence interface.

Definition at line 88 of file AbstractOSequence.h.

Constructor & Destructor Documentation

AbstractOProbabilisticSequence()

bpp::AbstractOProbabilisticSequence::AbstractOProbabilisticSequence ( )

inline

Definition at line 92 of file AbstractOSequence.h.

~AbstractOProbabilisticSequence()

virtual bpp::AbstractOProbabilisticSequence::~AbstractOProbabilisticSequence ( )

inlinevirtual

Definition at line 93 of file AbstractOSequence.h.

Member Function Documentation

getDataType()

const std::string bpp::IOProbabilisticSequence::getDataType ( ) const

inlinevirtualinherited

Implements bpp::IOFormat.

Reimplemented in bpp::Pasta.

Definition at line 44 of file IoSequence.h.

writeSequences() [1/2]

void bpp::AbstractOProbabilisticSequence::writeSequences ( const std::string &  path, const ProbabilisticSequenceContainerInterface &  sc, bool  overwrite = true  ) const

inlineoverridevirtual

Write a container to a file.

Parameters

path	The path to the file to write.
sc	The container to write.
overwrite	If true the sequences are written at the beginning of the file instead of being appended. Any previous content will be lost.

Implements bpp::OProbabilisticSequence.

Definition at line 103 of file AbstractOSequence.h.

References writeSequences().

writeSequences() [2/2]

void bpp::AbstractOProbabilisticSequence::writeSequences ( std::ostream &  output, const ProbabilisticSequenceContainerInterface &  sc  ) const

overridepure virtual

Write a container to a stream.

Parameters

output	The output stream where to write.
sc	The container to write.

Implements bpp::OProbabilisticSequence.

Referenced by bpp::AbstractOProbabilisticSequence2::writeAlignment(), and writeSequences().

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The documentation for this class was generated from the following file:

• Bpp/Seq/Io/AbstractOSequence.h