bpp::AbstractSequenceContainerIterator Class Reference

Partial implementation of the SequenceIterator interface, allowing to loop over an ordered sequence container. More...

#include <Bpp/Seq/Container/SequenceContainerIterator.h>

Inheritance diagram for bpp::AbstractSequenceContainerIterator:

Collaboration diagram for bpp::AbstractSequenceContainerIterator:

Public Member Functions
	AbstractSequenceContainerIterator (const OrderedSequenceContainer &sites)
	AbstractSequenceContainerIterator (const AbstractSequenceContainerIterator &asi)
AbstractSequenceContainerIterator &	operator= (const AbstractSequenceContainerIterator &asi)
virtual	~AbstractSequenceContainerIterator ()
virtual const IntCoreSequenceSymbolList *	nextSequence ()=0
virtual bool	hasMoreSequences () const =0

Protected Attributes
const OrderedSequenceContainer *	sequences_
size_t	currentPosition_

Detailed Description

Partial implementation of the SequenceIterator interface, allowing to loop over an ordered sequence container.

Definition at line 54 of file SequenceContainerIterator.h.

Constructor & Destructor Documentation

AbstractSequenceContainerIterator() [1/2]

AbstractSequenceContainerIterator::AbstractSequenceContainerIterator

(

const OrderedSequenceContainer &

sites

)

Definition at line 53 of file SequenceContainerIterator.cpp.

AbstractSequenceContainerIterator() [2/2]

bpp::AbstractSequenceContainerIterator::AbstractSequenceContainerIterator ( const AbstractSequenceContainerIterator &  asi )

inline

Definition at line 64 of file SequenceContainerIterator.h.

~AbstractSequenceContainerIterator()

virtual bpp::AbstractSequenceContainerIterator::~AbstractSequenceContainerIterator ( )

inlinevirtual

Definition at line 76 of file SequenceContainerIterator.h.

Member Function Documentation

hasMoreSequences()

virtual bool bpp::ConstSequenceIterator::hasMoreSequences ( ) const

pure virtualinherited

Implemented in bpp::SimpleSequenceContainerIterator.

nextSequence()

virtual const IntCoreSequenceSymbolList* bpp::ConstSequenceIterator::nextSequence ( )

pure virtualinherited

Implemented in bpp::ConstSequenceWithQualityIterator, and bpp::SimpleSequenceContainerIterator.

operator=()

AbstractSequenceContainerIterator& bpp::AbstractSequenceContainerIterator::operator= ( const AbstractSequenceContainerIterator &  asi )

inline

Definition at line 69 of file SequenceContainerIterator.h.

References currentPosition_, and sequences_.

Member Data Documentation

currentPosition_

size_t bpp::AbstractSequenceContainerIterator::currentPosition_

protected

Definition at line 59 of file SequenceContainerIterator.h.

Referenced by bpp::SimpleSequenceContainerIterator::hasMoreSequences(), bpp::SimpleSequenceContainerIterator::nextSequence(), and operator=().

sequences_

const OrderedSequenceContainer* bpp::AbstractSequenceContainerIterator::sequences_

protected

Definition at line 58 of file SequenceContainerIterator.h.

Referenced by bpp::SimpleSequenceContainerIterator::hasMoreSequences(), bpp::SimpleSequenceContainerIterator::nextSequence(), and operator=().

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The documentation for this class was generated from the following files:

• Bpp/Seq/Container/SequenceContainerIterator.h
• Bpp/Seq/Container/SequenceContainerIterator.cpp