bpp::TemplateStreamSequenceIterator< SequenceType > Class Template Reference

A sequence iterator based on a sequence stream. More...

#include <Bpp/Seq/Io/StreamSequenceIterator.h>

Inheritance diagram for bpp::TemplateStreamSequenceIterator< SequenceType >:

Collaboration diagram for bpp::TemplateStreamSequenceIterator< SequenceType >:

Public Member Functions
	StreamSequenceIterator (std::shared_ptr< ISequenceStream > seqStream, std::shared_ptr< std::istream > stream, std::shared_ptr< const Alphabet > alphabet)
virtual	~StreamSequenceIterator ()
std::unique_ptr< SequenceType >	nextSequence () override
bool	hasMoreSequences () const override

Private Member Functions
	StreamSequenceIterator (const StreamSequenceIterator &ssi)
StreamSequenceIterator &	operator= (const StreamSequenceIterator &ssi)

Private Attributes
std::shared_ptr< const Alphabet >	alphabet_
std::shared_ptr< const ISequenceStream< SequenceType > >	seqStream_
str::shared_ptr< std::istream >	stream_
SequenceType *	nextSeq_

Detailed Description

template<class SequenceType>
class bpp::TemplateStreamSequenceIterator< SequenceType >

A sequence iterator based on a sequence stream.

Definition at line 21 of file StreamSequenceIterator.h.

Constructor & Destructor Documentation

~StreamSequenceIterator()

template<class SequenceType>

virtual bpp::TemplateStreamSequenceIterator< SequenceType >::~StreamSequenceIterator ( )

inlinevirtual

Definition at line 49 of file StreamSequenceIterator.h.

Member Function Documentation

hasMoreSequences()

template<class SequenceType>

bool bpp::TemplateStreamSequenceIterator< SequenceType >::hasMoreSequences ( ) const

inlineoverridevirtual

Implements bpp::TemplateSequenceIteratorInterface< SequenceType >.

Definition at line 85 of file StreamSequenceIterator.h.

References bpp::TemplateStreamSequenceIterator< SequenceType >::StreamSequenceIterator().

nextSequence()

template<class SequenceType>

std::unique_ptr<SequenceType> bpp::TemplateStreamSequenceIterator< SequenceType >::nextSequence ( )

inlineoverridevirtual

Implements bpp::TemplateSequenceIteratorInterface< SequenceType >.

Definition at line 69 of file StreamSequenceIterator.h.

References bpp::TemplateStreamSequenceIterator< SequenceType >::nextSeq_.

operator=()

template<class SequenceType>

StreamSequenceIterator& bpp::TemplateStreamSequenceIterator< SequenceType >::operator= ( const StreamSequenceIterator &  ssi )

inlineprivate

Definition at line 59 of file StreamSequenceIterator.h.

StreamSequenceIterator() [1/2]

template<class SequenceType>

bpp::TemplateStreamSequenceIterator< SequenceType >::StreamSequenceIterator ( std::shared_ptr< ISequenceStream >  seqStream, std::shared_ptr< std::istream >  stream, std::shared_ptr< const Alphabet >  alphabet  )

inline

Definition at line 31 of file StreamSequenceIterator.h.

References bpp::TemplateStreamSequenceIterator< SequenceType >::nextSeq_.

Referenced by bpp::TemplateStreamSequenceIterator< SequenceType >::hasMoreSequences().

StreamSequenceIterator() [2/2]

template<class SequenceType>

bpp::TemplateStreamSequenceIterator< SequenceType >::StreamSequenceIterator ( const StreamSequenceIterator &  ssi )

inlineprivate

Definition at line 53 of file StreamSequenceIterator.h.

Member Data Documentation

alphabet_

template<class SequenceType>

std::shared_ptr<const Alphabet> bpp::TemplateStreamSequenceIterator< SequenceType >::alphabet_

private

Definition at line 25 of file StreamSequenceIterator.h.

nextSeq_

template<class SequenceType>

SequenceType* bpp::TemplateStreamSequenceIterator< SequenceType >::nextSeq_

private

Definition at line 28 of file StreamSequenceIterator.h.

Referenced by bpp::TemplateStreamSequenceIterator< SequenceType >::nextSequence(), and bpp::TemplateStreamSequenceIterator< SequenceType >::StreamSequenceIterator().

seqStream_

template<class SequenceType>

std::shared_ptr< const ISequenceStream<SequenceType> > bpp::TemplateStreamSequenceIterator< SequenceType >::seqStream_

private

Definition at line 26 of file StreamSequenceIterator.h.

stream_

template<class SequenceType>

str::shared_ptr<std::istream> bpp::TemplateStreamSequenceIterator< SequenceType >::stream_

private

Definition at line 27 of file StreamSequenceIterator.h.

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The documentation for this class was generated from the following file:

• Bpp/Seq/Io/StreamSequenceIterator.h