Substitution rate and gene expression pattern in mammals

Genes 1 to 100

                                                                        
NbT:      number of tissues where ESTs have been detected (in human). 
LgCDS:    length of the aligned protein coding sequences (CDS).       
Ka:       non-synonymous substitution rate.                           
LgS:      number of synonymous sites.                                 
Ks:       synonymous substitution rate.                               
LgSnd:    number of synonymous sites after having removed doublet substitutions.                                                               
Ks_nd:    synonymous substitution rate without doublet substitutions. 
Lg5'UTR:  length of the aligned 5'UTRs (*).                    
K 5'UTR:  substitution rate within 5'UTRs (*).                 
Lg3'UTR:  length of the aligned 3'UTRs (*).                    
K 3'UTR:  substitution rate within 3'UTRs (*).                 
                                                                             
   (*) UTR data from Makalowski and Boguski (1998) Proc. Natl. Acad. Sci. USA 95:9407-9412                                        
   (**) When both rat and mouse orthologs are available, human/rodent substitution rates are calculated using mouse.

					Human / Rodent (**)										Mouse / Rat
	Human acc. num.	Mouse acc. num.	Rat acc. num.	NbT	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd	Lg5'UTR	K 5'UTR	Lg3'UTR	K 3'UTR	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd
1	A03736 CDS	-	Y12502 CDS	5	2196	0.089	615	0.535	594	0.417	-	-	-	-	-	-	-	-	-	-
2	A03911 CDS	X70296 CDS	A03913 CDS	10	1188	0.086	337	0.565	323	0.458	-	-	-	-	1188	0.035	367	0.196	364	0.175
3	A07400 CDS	M98454 CDS	-	2	2481	0.056	743	0.456	720	0.360	-	-	187	0.519	-	-	-	-	-	-
4	A08693 CDS	-	U07795 CDS	5	552	0.043	172	0.484	170	0.437	-	-	-	-	-	-	-	-	-	-
5	A08802 CDS	X15378 CDS	-	1	2157	0.083	619	0.416	595	0.339	177	0.850	-	-	-	-	-	-	-	-
6	A16753 CDS	X73960 CDS	-	7	3399	0.040	1050	0.442	1022	0.390	-	-	343	0.373	-	-	-	-	-	-
7	A17362 CDS	D16106 CDS	M18769 CDS	2	1209	0.117	318	0.496	303	0.400	330	0.436	713	0.452	1209	0.036	373	0.216	369	0.187
8	A20498 CDS	X76088 CDS	-	2	2886	0.037	896	0.458	870	0.396	-	-	-	-	-	-	-	-	-	-
9	A23337 CDS	S49542 CDS	M30705 CDS	2	1413	0.045	431	0.491	419	0.448	-	-	-	-	1413	0.012	459	0.099	458	0.095
10	A28100 CDS	M86567 CDS	-	1	1353	0.014	440	0.430	431	0.386	-	-	346	0.278	-	-	-	-	-	-
11	A28102 CDS	M86568 CDS	L08492 CDS	0	1473	0.022	472	0.345	468	0.314	-	-	-	-	1473	0.010	481	0.109	482	0.108
12	A28104 CDS	-	X51992 CDS	2	1386	0.031	438	0.623	433	0.575	232	0.340	579	0.293	-	-	-	-	-	-
13	A28106 CDS	X51986 CDS	X55742 CDS	2	1329	0.048	403	0.553	390	0.459	-	-	-	-	1329	0.014	430	0.235	430	0.232
14	AB000220 CDS	X85994 CDS	-	2	1848	0.041	576	0.616	561	0.526	-	-	-	-	-	-	-	-	-	-
15	AB000409 CDS	Y11091 CDS	-	3	1236	0.040	384	0.461	375	0.410	-	-	-	-	-	-	-	-	-	-
16	AB000462 CDS	L14543 CDS	-	2	1677	0.078	485	0.541	464	0.402	-	-	-	-	-	-	-	-	-	-
17	AB001325 CDS	-	L35108 CDS	2	876	0.029	276	0.485	272	0.453	-	-	-	-	-	-	-	-	-	-
18	AB001835 CDS	M88299 CDS	AJ001641 CDS	0	1485	0.004	491	0.391	492	0.392	-	-	-	-	1485	0.004	491	0.131	491	0.131
19	AB004047 CDS	X03672 CDS	-	19	1125	0.002	375	0.374	373	0.367	-	-	-	-	-	-	-	-	-	-
20	AC002132 CDS	M74793 CDS	-	2	1746	0.040	542	0.529	524	0.453	-	-	352	0.243	-	-	-	-	-	-
21	AC002366 CDS	D31768 CDS	-	0	573	0.070	165	0.192	163	0.156	-	-	-	-	-	-	-	-	-	-
22	AF000573 CDS	U58988 CDS	-	5	1335	0.039	412	0.467	401	0.421	-	-	-	-	-	-	-	-	-	-
23	AF001177 CDS	-	U22297 CDS	6	1242	0.032	390	0.412	386	0.385	-	-	-	-	-	-	-	-	-	-
24	AF002246 CDS	X94310 CDS	-	2	3621	0.096	1011	0.548	983	0.447	-	-	-	-	-	-	-	-	-	-
25	AF002700 CDS	AF002701 CDS	-	4	1389	0.032	434	0.310	424	0.260	-	-	-	-	-	-	-	-	-	-
26	AF003521 CDS	-	U70050 CDS	4	3576	0.067	1061	0.445	1036	0.358	-	-	-	-	-	-	-	-	-	-
27	AF003522 CDS	X80903 CDS	U78889 CDS	1	2163	0.060	638	0.551	621	0.474	-	-	-	-	2142	0.021	686	0.155	682	0.147
28	AF004015 CDS	U86405 CDS	Y13380 CDS	7	1761	0.022	562	0.378	559	0.361	-	-	-	-	1761	0.005	582	0.124	581	0.119
29	AF022224 CDS	AF022223 CDS	-	9	657	0.127	174	0.378	168	0.261	-	-	-	-	-	-	-	-	-	-
30	AF027807 CDS	X13484 CDS	M11178 CDS	0	654	-	-	-	-	-	-	-	-	-	639	0.104	171	0.130	180	0.115
31	AD001527 CDS	-	U53859 CDS	13	789	0.031	246	0.509	247	0.459	-	-	-	-	-	-	-	-	-	-
32	AD000092 CDS	M92988 CDS	-	8	1248	0.030	392	0.634	388	0.599	-	-	560	0.216	-	-	-	-	-	-
33	AD000092 CDS	M97200 CDS	-	1	1068	0.179	253	0.835	237	0.560	-	-	-	-	-	-	-	-	-	-
34	AD000092 CDS	U18992 CDS	-	3	1305	0.081	375	0.630	360	0.542	-	-	-	-	-	-	-	-	-	-
35	AD000092 CDS	X92410 CDS	-	13	1089	0.025	347	0.384	337	0.315	-	-	-	-	-	-	-	-	-	-
36	AD000864 CDS	L04538 CDS	-	5	1947	0.055	580	0.430	573	0.385	-	-	-	-	-	-	-	-	-	-
37	D13641 CDS	-	D63411 CDS	8	435	-	-	-	-	-	-	-	422	0.403	-	-	-	-	-	-
38	D16815 CDS	U12142 CDS	X82777 CDS	1	1728	0.043	525	0.394	518	0.361	-	-	-	-	1728	0.023	548	0.178	542	0.162
39	D17408 CDS	U28932 CDS	D14437 CDS	4	891	0.012	290	0.528	286	0.500	-	-	489	0.243	891	0.008	293	0.253	293	0.249
40	D17525 CDS	D16492 CDS	-	6	2097	0.080	606	0.483	582	0.383	-	-	1747	0.577	-	-	-	-	-	-
41	D21878 CDS	D31788 CDS	D49955 CDS	5	933	0.172	227	0.621	207	0.421	-	-	314	0.507	933	0.048	283	0.220	277	0.191
42	D26579 CDS	X13335 CDS	-	0	2400	0.235	523	0.743	479	0.460	-	-	-	-	-	-	-	-	-	-
43	D38048 CDS	D83585 CDS	-	16	831	0.020	266	0.374	265	0.359	-	-	-	-	-	-	-	-	-	-
44	D49493 CDS	S82648 CDS	D49494 CDS	6	1422	0.094	397	0.603	379	0.475	229	0.483	710	0.475	1422	0.024	451	0.140	453	0.144
45	D49559 CDS	-	L19660 CDS	0	1362	0.108	371	0.506	354	0.385	-	-	284	0.512	-	-	-	-	-	-
46	D49818 CDS	-	M64797 CDS	0	1407	0.015	456	0.487	452	0.466	-	-	-	-	-	-	-	-	-	-
47	D49950 CDS	D49949 CDS	U77776 CDS	1	570	-	-	-	-	-	-	-	-	-	570	0.044	173	0.239	175	0.197
48	D49958 CDS	S65735 CDS	-	4	834	0.005	275	0.357	273	0.345	-	-	-	-	-	-	-	-	-	-
49	D50017 CDS	M84607 CDS	M63837 CDS	1	3267	0.044	1000	0.549	973	0.490	-	-	2611	0.308	3261	0.020	1044	0.234	1038	0.223
50	D50645 CDS	D50646 CDS	-	3	633	0.035	195	0.304	193	0.265	-	-	-	-	-	-	-	-	-	-
51	D63390 CDS	U57747 CDS	-	0	687	0.008	225	0.403	221	0.374	-	-	-	-	-	-	-	-	-	-
52	D63476 CDS	U96634 CDS	-	3	1938	0.036	602	0.690	579	0.590	-	-	-	-	-	-	-	-	-	-
53	D63506 CDS	D30798 CDS	-	5	1773	0.043	540	0.468	522	0.394	-	-	-	-	-	-	-	-	-	-
54	D63851 CDS	D45903 CDS	L26087 CDS	5	1782	0.003	591	0.444	589	0.440	-	-	-	-	1782	0.003	591	0.147	591	0.141
55	D63875 CDS	L49502 CDS	-	7	3513	0.014	1144	0.447	1133	0.423	-	-	-	-	-	-	-	-	-	-
56	D63878 CDS	D49382 CDS	-	10	1083	0.007	356	0.510	350	0.476	-	-	-	-	-	-	-	-	-	-
57	D76444 CDS	D76445 CDS	-	10	2049	0.022	654	0.287	652	0.270	-	-	-	-	-	-	-	-	-	-
58	D78011 CDS	-	D63704 CDS	2	1557	0.054	467	0.524	454	0.453	-	-	426	0.370	-	-	-	-	-	-
59	D78012 CDS	U72875 CDS	U52095 CDS	8	1716	0.016	553	0.471	543	0.422	-	-	-	-	1716	0.002	569	0.165	569	0.165
60	D78013 CDS	Y10339 CDS	Z46882 CDS	3	1716	0.008	562	0.363	556	0.337	172	0.383	1043	0.397	1716	0.003	569	0.157	567	0.150
61	D78014 CDS	X87817 CDS	-	6	1710	0.007	561	0.421	557	0.406	-	-	-	-	-	-	-	-	-	-
62	D78132 CDS	-	U08227 CDS	14	552	0.005	182	0.391	179	0.368	-	-	395	0.078	-	-	-	-	-	-
63	D78367 CDS	U08095 CDS	-	0	1440	0.126	382	0.583	361	0.408	-	-	-	-	-	-	-	-	-	-
64	D78611 CDS	D16262 CDS	-	9	1005	0.012	326	0.402	322	0.368	-	-	-	-	-	-	-	-	-	-
65	D79984 CDS	U40375 CDS	-	9	5178	0.010	1692	0.424	1675	0.403	-	-	-	-	-	-	-	-	-	-
66	D79985 CDS	D78641 CDS	-	3	1638	0.035	509	0.447	501	0.414	-	-	-	-	-	-	-	-	-	-
67	D79997 CDS	L76158 CDS	-	2	1929	0.090	542	0.500	513	0.376	-	-	-	-	-	-	-	-	-	-
68	D82060 CDS	M32010 CDS	-	1	1278	0.093	358	0.399	351	0.318	-	-	-	-	-	-	-	-	-	-
69	D83017 CDS	-	U48246 CDS	3	1296	0.041	397	0.560	387	0.508	-	-	-	-	-	-	-	-	-	-
70	D83018 CDS	U59230 CDS	U48245 CDS	4	2445	0.037	757	0.574	736	0.516	-	-	-	-	2442	0.020	779	0.231	771	0.207
71	D83195 CDS	U00478 CDS	-	1	846	0.148	223	0.792	208	0.600	-	-	-	-	-	-	-	-	-	-
72	D83597 CDS	D37797 CDS	-	0	1983	0.158	489	0.619	456	0.427	-	-	-	-	-	-	-	-	-	-
73	D83703 CDS	-	D63673 CDS	3	2934	0.081	853	0.495	813	0.397	-	-	196	0.416	-	-	-	-	-	-
74	D83735 CDS	Z19543 CDS	-	5	915	0.025	292	0.489	290	0.464	-	-	-	-	-	-	-	-	-	-
75	D88155 CDS	S65878 CDS	-	0	1383	0.036	430	0.428	420	0.393	-	-	-	-	-	-	-	-	-	-
76	D84284 CDS	L11332 CDS	D30795 CDS	3	900	0.306	175	0.615	160	0.355	-	-	312	0.724	897	0.068	263	0.187	261	0.155
77	D84361 CDS	U46854 CDS	-	2	1422	0.054	431	0.482	419	0.435	-	-	-	-	-	-	-	-	-	-
78	D85376 CDS	M94384 CDS	X66726 CDS	0	1176	0.026	371	0.389	362	0.345	-	-	-	-	1179	0.018	378	0.193	375	0.183
79	D85759 CDS	-	X79769 CDS	3	2262	0.004	750	0.246	744	0.228	-	-	-	-	-	-	-	-	-	-
80	D85815 CDS	D89821 CDS	-	5	630	0.101	174	0.562	171	0.421	-	-	-	-	-	-	-	-	-	-
81	D86043 CDS	D85785 CDS	D38468 CDS	4	1500	0.215	342	0.554	324	0.386	-	-	-	-	1494	0.122	401	0.131	405	0.083
82	D86479 CDS	X80478 CDS	-	8	2154	0.054	649	0.570	626	0.465	-	-	-	-	-	-	-	-	-	-
83	D86519 CDS	U58367 CDS	-	1	870	0.149	224	0.553	206	0.374	-	-	-	-	-	-	-	-	-	-
84	D86640 CDS	D86639 CDS	-	2	1203	0.095	335	0.367	323	0.309	-	-	-	-	-	-	-	-	-	-
85	D86956 CDS	D67016 CDS	-	7	2571	0.037	801	0.613	776	0.534	-	-	-	-	-	-	-	-	-	-
86	D87116 CDS	D87115 CDS	-	3	1041	0.017	335	0.385	333	0.370	-	-	-	-	-	-	-	-	-	-
87	D87292 CDS	U35741 CDS	X56228 CDS	5	891	0.054	270	0.507	256	0.403	-	-	-	-	885	0.016	287	0.168	286	0.159
88	D87953 CDS	U60593 CDS	-	8	1182	0.030	369	0.643	357	0.546	-	-	-	-	-	-	-	-	-	-
89	D87969 CDS	Z71268 CDS	-	3	1008	0.045	307	0.487	298	0.412	-	-	-	-	-	-	-	-	-	-
90	D87989 CDS	D87990 CDS	D87991 CDS	9	966	0.023	308	0.397	300	0.356	-	-	-	-	966	0.002	320	0.119	318	0.113
91	D88010 CDS	-	X53378 CDS	16	453	0.000	151	0.686	143	0.595	-	-	-	-	-	-	-	-	-	-
92	D88460 CDS	-	D88461 CDS	1	1503	0.028	475	0.393	466	0.331	-	-	-	-	-	-	-	-	-	-
93	D88532 CDS	S79169 CDS	D64047 CDS	0	1383	0.018	443	0.360	440	0.347	-	-	-	-	1383	0.018	442	0.182	440	0.175
94	D88613 CDS	U59876 CDS	-	1	1308	0.154	320	0.656	305	0.492	-	-	-	-	-	-	-	-	-	-
95	D89675 CDS	Z23143 CDS	-	0	1506	0.009	493	0.521	484	0.484	-	-	-	-	-	-	-	-	-	-
96	X90840 CDS	D29951 CDS	-	4	5061	0.015	1638	0.483	1602	0.431	-	-	-	-	-	-	-	-	-	-
97	X58377 CDS	U03421 CDS	-	0	597	0.066	175	0.525	165	0.429	-	-	495	0.413	-	-	-	-	-	-
98	X57436 CDS	S67043 CDS	-	1	1320	0.061	390	0.244	383	0.207	-	-	-	-	-	-	-	-	-	-
99	X57346 CDS	-	D17446 CDS	15	738	0.007	242	0.410	242	0.414	155	0.429	-	-	-	-	-	-	-	-
100	Z96050 CDS	U06948 CDS	U03470 CDS	1	834	0.120	217	0.391	208	0.261	-	-	702	0.452	831	0.051	252	0.164	251	0.138

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