Substitution rate and gene expression pattern in mammals

Genes 901 to 1000

                                                                        
NbT:      number of tissues where ESTs have been detected (in human). 
LgCDS:    length of the aligned protein coding sequences (CDS).       
Ka:       non-synonymous substitution rate.                           
LgS:      number of synonymous sites.                                 
Ks:       synonymous substitution rate.                               
LgSnd:    number of synonymous sites after having removed doublet substitutions.                                                               
Ks_nd:    synonymous substitution rate without doublet substitutions. 
Lg5'UTR:  length of the aligned 5'UTRs (*).                    
K 5'UTR:  substitution rate within 5'UTRs (*).                 
Lg3'UTR:  length of the aligned 3'UTRs (*).                    
K 3'UTR:  substitution rate within 3'UTRs (*).                 
                                                                             
   (*) UTR data from Makalowski and Boguski (1998) Proc. Natl. Acad. Sci. USA 95:9407-9412                                        
   (**) When both rat and mouse orthologs are available, human/rodent substitution rates are calculated using mouse.

					Human / Rodent (**)										Mouse / Rat
	Human acc. num.	Mouse acc. num.	Rat acc. num.	NbT	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd	Lg5'UTR	K 5'UTR	Lg3'UTR	K 3'UTR	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd
901	U15655 CDS	U58533 CDS	-	1	1644	0.021	528	0.424	524	0.400	-	-	-	-	-	-	-	-	-	-
902	U16031 CDS	L47650 CDS	-	4	2511	0.082	712	0.447	690	0.359	-	-	-	-	-	-	-	-	-	-
903	U16120 CDS	L03292 CDS	M96601 CDS	1	1860	0.037	577	0.361	572	0.334	-	-	456	0.156	1860	0.007	611	0.092	611	0.088
904	U16125 CDS	-	M83561 CDS	4	2715	0.015	879	0.392	864	0.366	-	-	-	-	-	-	-	-	-	-
905	U16126 CDS	-	Z11715 CDS	3	2724	0.006	898	0.355	887	0.334	-	-	-	-	-	-	-	-	-	-
906	U16127 CDS	-	Z11716 CDS	1	2757	0.007	906	0.467	893	0.440	-	-	689	0.479	-	-	-	-	-	-
907	U16129 CDS	-	M85037 CDS	1	2706	0.006	892	0.346	884	0.328	-	-	-	-	-	-	-	-	-	-
908	U16282 CDS	U80227 CDS	-	1	1803	0.101	504	0.745	471	0.535	-	-	-	-	-	-	-	-	-	-
909	U16296 CDS	U05245 CDS	-	3	4773	0.027	1509	0.450	1484	0.422	-	-	-	-	-	-	-	-	-	-
910	U16660 CDS	-	U08976 CDS	14	981	0.166	238	0.588	220	0.331	-	-	-	-	-	-	-	-	-	-
911	U16720 CDS	M84340 CDS	-	1	534	-	-	-	-	-	-	-	708	0.272	-	-	-	-	-	-
912	U16738 CDS	-	X94242 CDS	17	639	0.073	184	0.567	176	0.467	-	-	-	-	-	-	-	-	-	-
913	U16752 CDS	L12030 CDS	-	2	279	-	-	-	-	-	-	-	575	0.849	-	-	-	-	-	-
914	U16997 CDS	U43508 CDS	-	2	1545	0.063	457	0.433	448	0.381	-	-	-	-	-	-	-	-	-	-
915	U17032 CDS	U67160 CDS	-	6	4494	0.027	1422	0.251	1409	0.225	-	-	-	-	-	-	-	-	-	-
916	U17033 CDS	D30779 CDS	D30781 CDS	4	4374	0.165	1069	0.589	986	0.380	-	-	-	-	1227	0.050	367	0.243	360	0.214
917	U17074 CDS	U19596 CDS	-	3	504	0.038	155	0.237	152	0.190	-	-	-	-	-	-	-	-	-	-
918	U17163 CDS	L10426 CDS	-	2	1431	0.012	465	0.268	463	0.264	-	-	251	0.274	-	-	-	-	-	-
919	U17298 CDS	L11065 CDS	D16534 CDS	1	1140	0.034	356	0.595	345	0.527	253	0.797	-	-	1140	0.005	376	0.190	375	0.188
920	U17473 CDS	-	X70658 CDS	0	1380	0.052	418	0.537	410	0.483	-	-	-	-	-	-	-	-	-	-
921	U17743 CDS	U18310 CDS	-	0	1191	0.010	389	0.186	387	0.167	-	-	-	-	-	-	-	-	-	-
922	U17838 CDS	-	U17837 CDS	8	5112	0.084	1443	0.611	1400	0.524	-	-	839	0.440	-	-	-	-	-	-
923	U18018 CDS	X63190 CDS	-	4	1635	0.058	488	0.324	481	0.274	-	-	-	-	-	-	-	-	-	-
924	U18121 CDS	-	U18942 CDS	7	3495	0.122	927	0.494	890	0.373	-	-	-	-	-	-	-	-	-	-
925	U18197 CDS	-	J05210 CDS	6	3300	0.013	1072	0.445	1063	0.420	-	-	-	-	-	-	-	-	-	-
926	U18242 CDS	U21960 CDS	-	4	882	0.075	261	0.599	253	0.520	-	-	-	-	-	-	-	-	-	-
927	U18259 CDS	U60653 CDS	-	1	3231	0.164	801	0.652	733	0.433	-	-	-	-	-	-	-	-	-	-
928	U18548 CDS	D21061 CDS	U12184 CDS	0	1002	0.035	313	0.347	308	0.298	-	-	-	-	1002	0.011	327	0.140	327	0.141
929	U18549 CDS	-	U12006 CDS	0	1086	0.031	340	0.482	325	0.401	-	-	-	-	-	-	-	-	-	-
930	U18914 CDS	U44426 CDS	-	7	552	0.081	159	0.664	149	0.496	-	-	-	-	-	-	-	-	-	-
931	U18918 CDS	-	M92042 CDS	5	2646	0.010	864	0.372	857	0.361	210	0.290	902	0.358	-	-	-	-	-	-
932	U19107 CDS	U19106 CDS	-	1	1512	0.201	348	0.571	328	0.310	-	-	-	-	-	-	-	-	-	-
933	U19261 CDS	L35302 CDS	-	0	1227	0.079	350	0.428	335	0.355	-	-	-	-	-	-	-	-	-	-
934	U19345 CDS	U20282 CDS	-	3	2145	0.107	595	0.481	576	0.327	-	-	-	-	-	-	-	-	-	-
935	U19487 CDS	D50589 CDS	U48858 CDS	0	1071	0.080	311	0.537	298	0.416	-	-	-	-	1056	0.046	322	0.192	322	0.173
936	U19718 CDS	L23769 CDS	-	6	540	0.050	164	0.470	163	0.422	-	-	-	-	-	-	-	-	-	-
937	U19727 CDS	M72414 CDS	-	10	3336	0.229	722	0.429	688	0.245	-	-	1389	0.335	-	-	-	-	-	-
938	U19765 CDS	U20326 CDS	-	10	531	0.003	176	0.242	177	0.226	-	-	851	0.070	-	-	-	-	-	-
939	U19816 CDS	U19755 CDS	X53858 CDS	1	1113	0.010	364	0.296	364	0.284	-	-	-	-	1113	0.002	369	0.109	370	0.112
940	U19822 CDS	-	J03808 CDS	1	7035	0.012	2286	0.377	2266	0.362	-	-	-	-	-	-	-	-	-	-
941	U19906 CDS	D49730 CDS	U39450 CDS	3	1254	0.097	344	0.574	336	0.471	-	-	-	-	1254	0.042	383	0.276	383	0.253
942	U19977 CDS	-	M23721 CDS	1	1251	0.078	362	0.488	351	0.409	-	-	-	-	-	-	-	-	-	-
943	X06347 CDS	L15447 CDS	-	11	843	0.014	272	0.563	269	0.533	-	-	217	0.252	-	-	-	-	-	-
944	X12517 CDS	X96767 CDS	-	13	477	0.003	158	0.573	156	0.556	-	-	-	-	-	-	-	-	-	-
945	U20141 CDS	U43428 CDS	U03699 CDS	1	3432	0.112	926	0.539	895	0.443	188	0.476	348	0.724	3432	0.033	1071	0.188	1062	0.172
946	U20157 CDS	U34277 CDS	-	2	1320	0.238	290	0.672	260	0.363	-	-	-	-	-	-	-	-	-	-
947	U20158 CDS	U20159 CDS	-	4	1587	0.088	445	0.517	423	0.412	-	-	-	-	-	-	-	-	-	-
948	U20280 CDS	X94444 CDS	AF010306 CDS	7	987	0.075	284	0.415	279	0.342	-	-	-	-	987	0.029	310	0.242	310	0.239
949	U20285 CDS	-	X87885 CDS	8	1413	0.015	457	0.547	451	0.516	-	-	298	0.615	-	-	-	-	-	-
950	U20350 CDS	-	U04808 CDS	0	1059	0.113	292	0.778	264	0.506	-	-	185	0.596	-	-	-	-	-	-
951	U20362 CDS	L31959 CDS	-	6	2469	0.057	730	0.430	716	0.391	-	-	-	-	-	-	-	-	-	-
952	U20536 CDS	Y13087 CDS	-	2	822	0.061	249	0.685	237	0.595	-	-	-	-	-	-	-	-	-	-
953	U20657 CDS	L00681 CDS	-	9	1863	0.057	554	0.428	543	0.363	-	-	-	-	-	-	-	-	-	-
954	U20982 CDS	X76066 CDS	-	3	762	0.047	231	0.284	228	0.258	-	-	-	-	-	-	-	-	-	-
955	U21092 CDS	U21050 CDS	-	1	1701	0.020	545	0.514	535	0.482	-	-	-	-	-	-	-	-	-	-
956	U21108 CDS	-	U23438 CDS	3	1182	0.020	379	0.396	375	0.363	-	-	-	-	-	-	-	-	-	-
957	U21128 CDS	S79461 CDS	X84039 CDS	10	1014	0.076	291	0.729	276	0.655	-	-	614	0.398	1014	0.019	325	0.330	320	0.318
958	U21551 CDS	U42443 CDS	U35774 CDS	1	1152	0.089	323	0.856	311	0.714	-	-	-	-	1137	0.081	323	0.305	313	0.241
959	U21847 CDS	Z36270 CDS	U78875 CDS	4	1434	0.175	362	0.701	342	0.448	-	-	-	-	1434	0.133	393	0.373	383	0.207
960	U21858 CDS	-	U40188 CDS	11	759	0.115	200	0.710	187	0.446	-	-	-	-	-	-	-	-	-	-
961	U22055 CDS	-	U83883 CDS	12	2637	0.028	834	0.437	827	0.404	-	-	-	-	-	-	-	-	-	-
962	U22413 CDS	X73052 CDS	L48490 CDS	0	1281	0.009	420	0.593	419	0.584	-	-	-	-	1281	0.003	424	0.237	424	0.237
963	U22431 CDS	AF004155 CDS	-	8	2463	0.047	746	0.357	733	0.310	-	-	-	-	-	-	-	-	-	-
964	U22526 CDS	-	D45252 CDS	5	2196	0.098	613	0.596	591	0.521	-	-	592	0.738	-	-	-	-	-	-
965	U22662 CDS	-	U11685 CDS	7	1335	0.047	407	0.397	397	0.337	-	-	-	-	-	-	-	-	-	-
966	U23767 CDS	U09383 CDS	U55995 CDS	6	3459	0.009	1139	0.297	1137	0.286	-	-	-	-	3441	0.008	1133	0.092	1131	0.087
967	U23853 CDS	L11330 CDS	-	1	942	0.077	272	0.502	267	0.435	-	-	503	0.410	-	-	-	-	-	-
968	U24152 CDS	-	U49953 CDS	5	1632	0.007	536	0.312	532	0.297	-	-	-	-	-	-	-	-	-	-
969	U24153 CDS	-	U35345 CDS	3	1572	0.017	506	0.469	496	0.443	-	-	-	-	-	-	-	-	-	-
970	U24163 CDS	U91905 CDS	-	4	969	0.042	296	0.337	294	0.318	-	-	-	-	-	-	-	-	-	-
971	U25128 CDS	-	U55836 CDS	0	1641	0.103	445	0.563	434	0.468	-	-	-	-	-	-	-	-	-	-
972	U25147 CDS	-	L12016 CDS	10	933	0.023	296	0.449	288	0.405	-	-	505	0.199	-	-	-	-	-	-
973	U25182 CDS	U96746 CDS	-	15	813	0.058	243	0.470	233	0.391	-	-	-	-	-	-	-	-	-	-
974	U25265 CDS	-	U37464 CDS	2	1314	0.008	430	0.369	425	0.356	-	-	330	0.459	-	-	-	-	-	-
975	U25435 CDS	U51037 CDS	-	6	2181	0.006	719	0.345	718	0.339	-	-	-	-	-	-	-	-	-	-
976	U25441 CDS	X67274 CDS	X53944 CDS	0	1194	0.060	357	0.423	349	0.363	-	-	-	-	1194	0.015	386	0.168	432	0.156
977	U25997 CDS	-	U62667 CDS	2	741	0.019	237	0.323	235	0.310	-	-	-	-	-	-	-	-	-	-
978	U26312 CDS	X56683 CDS	-	13	519	0.006	171	0.540	171	0.526	-	-	-	-	-	-	-	-	-	-
979	U26398 CDS	-	U26397 CDS	0	2814	0.019	907	0.437	892	0.406	281	0.537	-	-	-	-	-	-	-	-
980	U26403 CDS	U90664 CDS	U69279 CDS	1	684	0.004	226	0.127	226	0.127	-	-	-	-	684	0.006	226	0.104	225	0.094
981	U26425 CDS	U43144 CDS	-	1	3699	0.043	1135	0.510	1111	0.452	-	-	-	-	-	-	-	-	-	-
982	U26446 CDS	D45185 CDS	-	5	1431	0.074	419	0.439	401	0.331	-	-	-	-	-	-	-	-	-	-
983	U26648 CDS	-	L20822 CDS	5	903	0.024	288	0.386	285	0.354	-	-	544	0.212	-	-	-	-	-	-
984	U27193 CDS	X95518 CDS	-	0	1866	0.061	561	0.550	545	0.437	-	-	-	-	-	-	-	-	-	-
985	U27266 CDS	U68267 CDS	AF077338 CDS	2	1410	0.092	394	0.401	381	0.325	-	-	-	-	1431	0.054	435	0.187	437	0.143
986	U27459 CDS	U27457 CDS	-	2	1728	0.132	452	0.348	447	0.291	-	-	-	-	-	-	-	-	-	-
987	U27768 CDS	AB004315 CDS	U27767 CDS	3	615	0.027	196	0.441	191	0.415	-	-	-	-	615	0.009	201	0.165	201	0.165
988	U27831 CDS	U28217 CDS	-	2	1611	0.067	476	0.364	465	0.297	-	-	-	-	-	-	-	-	-	-
989	U28043 CDS	-	M85300 CDS	2	2484	0.059	744	0.591	713	0.500	-	-	-	-	-	-	-	-	-	-
990	U28049 CDS	U15566 CDS	-	6	2097	0.027	663	0.375	652	0.332	-	-	-	-	-	-	-	-	-	-
991	U28368 CDS	X75018 CDS	-	1	483	0.009	158	0.262	156	0.252	-	-	-	-	-	-	-	-	-	-
992	U28386 CDS	D55720 CDS	-	13	1587	0.029	500	0.526	488	0.480	-	-	-	-	-	-	-	-	-	-
993	U28424 CDS	U28423 CDS	-	3	1512	0.024	483	0.628	470	0.555	-	-	-	-	-	-	-	-	-	-
994	U28918 CDS	-	X82021 CDS	9	1104	0.042	337	0.347	337	0.325	-	-	387	0.226	-	-	-	-	-	-
995	U29091 CDS	M32032 CDS	-	9	1416	0.071	411	0.358	396	0.283	-	-	-	-	-	-	-	-	-	-
996	U29171 CDS	-	L07578 CDS	6	1245	0.022	400	0.507	393	0.441	-	-	353	0.959	-	-	-	-	-	-
997	U29332 CDS	U77040 CDS	-	3	816	0.037	251	0.566	249	0.539	-	-	-	-	-	-	-	-	-	-
998	U29343 CDS	X64550 CDS	U87983 CDS	4	1641	0.163	411	0.619	389	0.433	-	-	-	-	1422	0.066	418	0.224	430	0.183
999	U29344 CDS	-	M84761 CDS	4	7503	0.113	2045	0.644	1936	0.509	-	-	711	0.502	-	-	-	-	-	-
1000	U29700 CDS	-	X71916 CDS	2	1671	0.124	442	0.437	418	0.319	-	-	-	-	-	-	-	-	-	-

If you have problems or comments...

Back to Query home page