Substitution rate and gene expression pattern in mammals

Genes 1001 to 1100

                                                                        
NbT:      number of tissues where ESTs have been detected (in human). 
LgCDS:    length of the aligned protein coding sequences (CDS).       
Ka:       non-synonymous substitution rate.                           
LgS:      number of synonymous sites.                                 
Ks:       synonymous substitution rate.                               
LgSnd:    number of synonymous sites after having removed doublet substitutions.                                                               
Ks_nd:    synonymous substitution rate without doublet substitutions. 
Lg5'UTR:  length of the aligned 5'UTRs (*).                    
K 5'UTR:  substitution rate within 5'UTRs (*).                 
Lg3'UTR:  length of the aligned 3'UTRs (*).                    
K 3'UTR:  substitution rate within 3'UTRs (*).                 
                                                                             
   (*) UTR data from Makalowski and Boguski (1998) Proc. Natl. Acad. Sci. USA 95:9407-9412                                        
   (**) When both rat and mouse orthologs are available, human/rodent substitution rates are calculated using mouse.

					Human / Rodent (**)										Mouse / Rat
	Human acc. num.	Mouse acc. num.	Rat acc. num.	NbT	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd	Lg5'UTR	K 5'UTR	Lg3'UTR	K 3'UTR	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd
1001	U29874 CDS	U29875 CDS	-	0	675	0.196	163	0.833	150	0.450	-	-	-	-	-	-	-	-	-	-
1002	U29895 CDS	D29987 CDS	AF082834 CDS	2	1179	0.057	351	0.535	343	0.484	-	-	-	-	1179	0.022	375	0.244	374	0.237
1003	X64044 CDS	X64587 CDS	-	3	1425	0.002	474	0.380	470	0.366	-	-	218	0.120	-	-	-	-	-	-
1004	U30185 CDS	X91813 CDS	L29419 CDS	0	1101	0.031	346	0.603	338	0.528	-	-	1230	0.517	1101	0.002	365	0.160	364	0.156
1005	U30246 CDS	U13174 CDS	-	0	3612	0.038	1121	0.451	1100	0.371	-	-	-	-	-	-	-	-	-	-
1006	U30473 CDS	U29056 CDS	-	4	828	0.072	242	0.736	226	0.549	-	-	-	-	-	-	-	-	-	-
1007	U30826 CDS	-	L13635 CDS	16	807	0.009	265	0.244	266	0.241	-	-	-	-	-	-	-	-	-	-
1008	U30891 CDS	L09192 CDS	U32314 CDS	4	3534	0.017	1140	0.457	1120	0.423	-	-	419	0.243	3534	0.008	1161	0.175	1157	0.167
1009	U31110 CDS	U95167 CDS	-	3	2277	0.003	756	0.457	747	0.438	-	-	-	-	-	-	-	-	-	-
1010	U31202 CDS	U79163 CDS	-	0	696	0.004	230	0.234	228	0.217	-	-	-	-	-	-	-	-	-	-
1011	U31466 CDS	D14552 CDS	U67309 CDS	0	4287	0.034	1342	0.565	1320	0.511	-	-	-	-	4287	0.010	1400	0.202	1395	0.192
1012	U31814 CDS	U31758 CDS	-	8	1464	0.008	480	0.431	475	0.404	-	-	-	-	-	-	-	-	-	-
1013	U31929 CDS	U41568 CDS	X99470 CDS	1	1410	0.233	308	0.617	283	0.397	-	-	-	-	1407	0.047	426	0.139	419	0.113
1014	U31933 CDS	U76416 CDS	-	11	474	0.000	158	0.604	158	0.604	-	-	-	-	-	-	-	-	-	-
1015	U31986 CDS	-	L14018 CDS	1	978	0.023	312	0.395	304	0.340	153	0.212	306	0.102	-	-	-	-	-	-
1016	U32315 CDS	D29797 CDS	-	4	867	0.014	280	0.367	277	0.351	-	-	-	-	-	-	-	-	-	-
1017	U32323 CDS	X74953 CDS	-	4	1266	0.094	354	0.449	336	0.333	-	-	-	-	-	-	-	-	-	-
1018	U32376 CDS	-	U49049 CDS	1	2556	0.022	820	0.341	815	0.316	-	-	-	-	-	-	-	-	-	-
1019	U32519 CDS	AB001927 CDS	-	6	1392	0.031	435	0.623	431	0.581	-	-	-	-	-	-	-	-	-	-
1020	U32672 CDS	-	S77867 CDS	0	1107	0.073	324	0.518	315	0.437	-	-	-	-	-	-	-	-	-	-
1021	U32989 CDS	U24493 CDS	M55167 CDS	3	1218	0.065	359	0.719	345	0.617	-	-	405	0.537	1218	0.015	393	0.158	392	0.149
1022	U33052 CDS	-	U75358 CDS	7	2523	0.042	782	0.381	768	0.341	-	-	-	-	-	-	-	-	-	-
1023	U33267 CDS	U09399 CDS	-	5	1488	0.018	479	0.620	470	0.583	-	-	-	-	-	-	-	-	-	-
1024	U33429 CDS	U65592 CDS	X76724 CDS	1	1101	0.007	361	0.451	360	0.447	-	-	-	-	1101	0.002	365	0.145	365	0.145
1025	U33837 CDS	-	L34049 CDS	2	13950	0.142	3563	0.622	3333	0.451	-	-	-	-	-	-	-	-	-	-
1026	U34070 CDS	M62362 CDS	X12752 CDS	1	1062	0.057	319	0.368	312	0.274	-	-	-	-	1059	0.044	326	0.212	324	0.139
1027	U34587 CDS	-	U16253 CDS	1	1233	0.033	385	0.390	370	0.313	-	-	157	0.590	-	-	-	-	-	-
1028	U34683 CDS	U35456 CDS	L38615 CDS	9	1422	0.066	420	0.306	413	0.273	-	-	372	0.360	1422	0.019	455	0.157	448	0.140
1029	U34802 CDS	M91243 CDS	-	0	1296	0.061	383	0.575	374	0.482	-	-	-	-	-	-	-	-	-	-
1030	U34819 CDS	-	L27128 CDS	5	1278	0.004	423	0.441	420	0.406	-	-	-	-	-	-	-	-	-	-
1031	U34879 CDS	X89627 CDS	X97754 CDS	4	972	0.214	223	0.882	204	0.543	-	-	-	-	981	0.032	307	0.185	316	0.157
1032	U34962 CDS	X75415 CDS	-	0	819	0.067	237	0.478	226	0.385	-	-	-	-	-	-	-	-	-	-
1033	U35003 CDS	-	L27111 CDS	8	1269	0.012	414	0.455	410	0.429	-	-	-	-	-	-	-	-	-	-
1034	U35100 CDS	U35101 CDS	-	0	402	-	-	-	-	-	293	0.771	172	0.404	-	-	-	-	-	-
1035	U35113 CDS	-	U02522 CDS	9	2109	0.019	679	0.435	677	0.417	-	-	442	0.242	-	-	-	-	-	-
1036	U35139 CDS	D76440 CDS	-	1	963	0.095	267	0.420	260	0.340	-	-	-	-	-	-	-	-	-	-
1037	U35143 CDS	U35142 CDS	AF090306 CDS	14	1275	0.001	424	0.276	422	0.268	-	-	-	-	1275	0.001	424	0.090	424	0.090
1038	U35237 CDS	-	L19694 CDS	1	774	0.171	186	0.606	175	0.410	-	-	-	-	-	-	-	-	-	-
1039	U35246 CDS	U66865 CDS	U81160 CDS	1	1710	0.005	564	0.190	561	0.183	-	-	-	-	1710	0.004	565	0.162	562	0.154
1040	U35340 CDS	-	M13534 CDS	0	747	0.120	200	0.690	191	0.499	-	-	-	-	-	-	-	-	-	-
1041	U35451 CDS	X56690 CDS	-	0	555	0.000	185	0.267	185	0.267	-	-	-	-	-	-	-	-	-	-
1042	U36188 CDS	U27106 CDS	M23674 CDS	17	1305	0.001	434	0.327	432	0.318	-	-	441	0.221	1305	0.000	435	0.117	435	0.117
1043	U36190 CDS	-	D17512 CDS	9	624	0.039	193	0.556	193	0.506	-	-	-	-	-	-	-	-	-	-
1044	U36221 CDS	-	M58716 CDS	1	1575	0.224	357	0.560	330	0.349	-	-	227	0.624	-	-	-	-	-	-
1045	U36601 CDS	U02304 CDS	-	5	2649	0.018	854	0.314	845	0.292	-	-	-	-	-	-	-	-	-	-
1046	U36787 CDS	U36788 CDS	-	5	804	0.086	227	0.521	222	0.420	-	-	-	-	-	-	-	-	-	-
1047	U36798 CDS	-	U38179 CDS	0	3408	0.097	946	0.607	901	0.481	-	-	-	-	-	-	-	-	-	-
1048	U37022 CDS	L01640 CDS	-	13	909	0.028	287	0.454	283	0.419	-	-	178	0.352	-	-	-	-	-	-
1049	U37055 CDS	M74180 CDS	-	6	2121	0.116	571	0.578	543	0.425	-	-	-	-	-	-	-	-	-	-
1050	U37122 CDS	-	U35775 CDS	13	2013	0.050	609	0.569	588	0.481	-	-	-	-	-	-	-	-	-	-
1051	U37248 CDS	-	M57547 CDS	5	1209	0.118	335	0.604	314	0.448	-	-	-	-	-	-	-	-	-	-
1052	U37359 CDS	U58987 CDS	-	4	2034	0.061	605	0.703	573	0.561	-	-	-	-	-	-	-	-	-	-
1053	U37431 CDS	M22115 CDS	U93092 CDS	0	990	0.031	309	0.386	307	0.356	-	-	-	-	984	0.018	315	0.101	315	0.101
1054	U37448 CDS	D86353 CDS	-	4	909	0.108	248	0.692	236	0.514	-	-	-	-	-	-	-	-	-	-
1055	U37518 CDS	U37522 CDS	-	10	843	0.237	179	0.829	167	0.491	-	-	-	-	-	-	-	-	-	-
1056	U37529 CDS	D17584 CDS	-	0	387	-	-	-	-	-	-	-	531	0.293	-	-	-	-	-	-
1057	U38175 CDS	U65735 CDS	-	7	978	0.013	318	0.405	310	0.369	-	-	-	-	-	-	-	-	-	-
1058	U38291 CDS	-	M83196 CDS	5	8091	0.120	2154	0.498	2057	0.377	-	-	-	-	-	-	-	-	-	-
1059	U38480 CDS	X66225 CDS	-	3	1389	0.010	454	0.464	448	0.435	-	-	-	-	-	-	-	-	-	-
1060	U38846 CDS	Z31554 CDS	-	16	1617	0.018	520	0.356	508	0.322	-	-	-	-	-	-	-	-	-	-
1061	U39050 CDS	U18869 CDS	-	9	2289	0.099	638	0.386	618	0.280	-	-	-	-	-	-	-	-	-	-
1062	U39226 CDS	U81453 CDS	-	2	6645	0.018	2136	0.449	2113	0.421	-	-	-	-	-	-	-	-	-	-
1063	U39318 CDS	-	U13177 CDS	13	441	-	-	-	-	-	-	-	220	0.543	-	-	-	-	-	-
1064	U39412 CDS	-	X89968 CDS	10	885	0.018	284	0.431	279	0.383	-	-	278	0.458	-	-	-	-	-	-
1065	U39487 CDS	X75129 CDS	-	0	3996	0.059	1190	0.536	1152	0.457	-	-	520	0.713	-	-	-	-	-	-
1066	U39576 CDS	U67065 CDS	-	0	1569	0.154	388	0.491	365	0.324	-	-	-	-	-	-	-	-	-	-
1067	U39840 CDS	U44752 CDS	-	0	1404	0.024	444	0.326	444	0.306	-	-	702	0.816	-	-	-	-	-	-
1068	U39905 CDS	-	M97380 CDS	0	1563	0.103	434	0.469	416	0.377	-	-	-	-	-	-	-	-	-	-
1069	U39945 CDS	-	D13061 CDS	16	717	0.036	222	0.512	217	0.430	-	-	-	-	-	-	-	-	-	-
1070	U40038 CDS	M55412 CDS	-	5	1077	0.001	358	0.259	356	0.245	-	-	-	-	-	-	-	-	-	-
1071	U40369 CDS	L10244 CDS	-	14	513	0.022	164	0.388	161	0.374	172	0.170	369	0.163	-	-	-	-	-	-
1072	U40391 CDS	-	U38306 CDS	0	615	0.100	171	0.440	167	0.375	-	-	-	-	-	-	-	-	-	-
1073	U40571 CDS	U00677 CDS	-	6	1497	0.042	466	0.439	456	0.392	-	-	-	-	-	-	-	-	-	-
1074	U40572 CDS	U00678 CDS	-	9	1560	0.018	501	0.341	497	0.314	-	-	-	-	-	-	-	-	-	-
1075	U40623 CDS	U48830 CDS	U36580 CDS	4	2307	0.072	671	0.432	656	0.372	-	-	-	-	2298	0.022	734	0.140	728	0.121
1076	U40705 CDS	U65586 CDS	-	9	1260	0.238	283	0.445	267	0.265	-	-	-	-	-	-	-	-	-	-
1077	U40998 CDS	-	U40999 CDS	8	720	0.043	221	0.346	219	0.315	-	-	504	0.350	-	-	-	-	-	-
1078	U41514 CDS	U73820 CDS	U35890 CDS	10	1677	0.009	548	0.261	543	0.249	-	-	-	-	1677	0.006	552	0.214	552	0.214
1079	U41517 CDS	L02914 CDS	X70257 CDS	1	807	0.039	253	0.442	246	0.409	-	-	465	0.257	807	0.010	263	0.151	261	0.140
1080	U41745 CDS	-	U41744 CDS	3	543	0.020	174	0.422	172	0.393	-	-	268	0.096	-	-	-	-	-	-
1081	U41806 CDS	U40930 CDS	Y08355 CDS	17	1320	0.049	400	0.504	398	0.446	-	-	-	-	1311	0.013	427	0.136	428	0.125
1082	U41815 CDS	-	L39991 CDS	4	2754	0.030	865	0.330	857	0.300	-	-	261	0.294	-	-	-	-	-	-
1083	U41901 CDS	-	U31554 CDS	2	1014	0.007	334	0.211	333	0.207	-	-	-	-	-	-	-	-	-	-
1084	U42030 CDS	U22829 CDS	U22830 CDS	1	1119	0.028	354	0.584	344	0.540	615	0.444	998	0.839	1119	0.015	362	0.142	358	0.126
1085	U42391 CDS	-	X77609 CDS	4	5901	0.116	1619	0.734	1537	0.529	-	-	-	-	-	-	-	-	-	-
1086	U42408 CDS	U58011 CDS	-	3	1509	0.199	348	0.679	319	0.375	-	-	-	-	-	-	-	-	-	-
1087	U42412 CDS	-	X95578 CDS	9	990	0.019	318	0.541	311	0.509	-	-	294	0.404	-	-	-	-	-	-
1088	U43077 CDS	U43076 CDS	D26564 CDS	6	1134	0.024	360	0.543	359	0.508	-	-	-	-	1134	0.027	363	0.184	361	0.154
1089	U43185 CDS	U36502 CDS	U24175 CDS	6	2379	0.018	763	0.391	757	0.377	-	-	1058	0.570	2379	0.009	777	0.173	775	0.171
1090	U43195 CDS	U58512 CDS	U61266 CDS	8	4062	0.017	1308	0.318	1289	0.289	-	-	-	-	4059	0.009	1327	0.140	1325	0.138
1091	U43399 CDS	Z19599 CDS	U53882 CDS	16	765	0.000	255	0.302	251	0.286	-	-	-	-	765	0.007	252	0.027	252	0.027
1092	U43415 CDS	U22421 CDS	D45862 CDS	1	498	-	-	-	-	-	-	-	-	-	498	0.016	160	0.115	159	0.104
1093	U43628 CDS	U14729 CDS	-	3	1131	0.468	183	1.048	151	0.447	-	-	-	-	-	-	-	-	-	-
1094	U43672 CDS	U43673 CDS	-	0	1605	0.244	348	0.740	315	0.468	-	-	-	-	-	-	-	-	-	-
1095	U43701 CDS	-	X65228 CDS	18	468	0.000	156	0.439	154	0.419	-	-	-	-	-	-	-	-	-	-
1096	U43899 CDS	U43900 CDS	-	6	1620	0.036	499	0.409	488	0.345	-	-	-	-	-	-	-	-	-	-
1097	U43916 CDS	X98471 CDS	-	0	471	-	-	-	-	-	-	-	270	0.316	-	-	-	-	-	-
1098	U44378 CDS	U79748 CDS	-	7	1653	0.012	540	0.387	535	0.367	-	-	-	-	-	-	-	-	-	-
1099	U45878 CDS	U88908 CDS	-	1	1800	0.165	440	0.750	404	0.538	-	-	-	-	-	-	-	-	-	-
1100	U45879 CDS	U88909 CDS	-	8	1830	0.097	510	0.527	492	0.415	-	-	-	-	-	-	-	-	-	-

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