Substitution rate and gene expression pattern in mammals

Genes 1101 to 1200

                                                                        
NbT:      number of tissues where ESTs have been detected (in human). 
LgCDS:    length of the aligned protein coding sequences (CDS).       
Ka:       non-synonymous substitution rate.                           
LgS:      number of synonymous sites.                                 
Ks:       synonymous substitution rate.                               
LgSnd:    number of synonymous sites after having removed doublet substitutions.                                                               
Ks_nd:    synonymous substitution rate without doublet substitutions. 
Lg5'UTR:  length of the aligned 5'UTRs (*).                    
K 5'UTR:  substitution rate within 5'UTRs (*).                 
Lg3'UTR:  length of the aligned 3'UTRs (*).                    
K 3'UTR:  substitution rate within 3'UTRs (*).                 
                                                                             
   (*) UTR data from Makalowski and Boguski (1998) Proc. Natl. Acad. Sci. USA 95:9407-9412                                        
   (**) When both rat and mouse orthologs are available, human/rodent substitution rates are calculated using mouse.

					Human / Rodent (**)										Mouse / Rat
	Human acc. num.	Mouse acc. num.	Rat acc. num.	NbT	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd	Lg5'UTR	K 5'UTR	Lg3'UTR	K 3'UTR	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd
1101	U45880 CDS	U88990 CDS	-	1	1488	0.070	433	0.302	427	0.265	-	-	-	-	-	-	-	-	-	-
1102	U46165 CDS	-	U12187 CDS	3	804	0.060	241	0.653	234	0.538	-	-	-	-	-	-	-	-	-	-
1103	U46461 CDS	U28138 CDS	-	2	1995	0.040	615	0.534	595	0.444	-	-	-	-	-	-	-	-	-	-
1104	U46838 CDS	D86726 CDS	-	9	2463	0.035	775	0.514	756	0.460	-	-	-	-	-	-	-	-	-	-
1105	U46920 CDS	L36962 CDS	-	9	951	0.046	289	0.372	282	0.312	-	-	-	-	-	-	-	-	-	-
1106	U47025 CDS	-	L10668 CDS	4	2511	0.026	797	0.493	780	0.438	-	-	-	-	-	-	-	-	-	-
1107	U47413 CDS	L49507 CDS	X70871 CDS	7	882	0.041	272	0.344	268	0.296	-	-	-	-	747	0.017	240	0.275	239	0.255
1108	U47621 CDS	-	X65454 CDS	5	1212	0.080	351	0.476	341	0.350	-	-	-	-	-	-	-	-	-	-
1109	U47654 CDS	S79731 CDS	M17091 CDS	1	1698	0.067	506	0.538	491	0.424	-	-	-	-	1698	0.021	544	0.189	548	0.182
1110	U47924 CDS	M17080 CDS	M15768 CDS	2	1359	0.352	251	0.609	226	0.275	-	-	-	-	1347	0.158	336	0.181	333	0.130
1111	U47924 CDS	AC002397 CDS	L29090 CDS	1	1020	0.018	328	0.407	327	0.390	-	-	-	-	1020	0.006	336	0.183	336	0.183
1112	U47924 CDS	X78683 CDS	-	15	894	0.002	297	0.385	292	0.357	-	-	-	-	-	-	-	-	-	-
1113	U47924 CDS	D87744 CDS	U31777 CDS	7	3519	0.034	1099	0.392	1070	0.348	-	-	-	-	3516	0.019	1136	0.159	1126	0.143
1114	U47924 CDS	M68902 CDS	-	8	1785	0.030	560	0.456	554	0.422	159	0.557	205	0.342	-	-	-	-	-	-
1115	U48296 CDS	U84411 CDS	L27843 CDS	7	519	0.000	173	0.204	173	0.204	-	-	-	-	519	0.000	173	0.060	173	0.060
1116	U48361 CDS	U47543 CDS	-	2	1575	0.026	500	0.422	491	0.390	-	-	-	-	-	-	-	-	-	-
1117	U48705 CDS	L57509 CDS	L26525 CDS	6	2727	0.036	852	0.448	834	0.389	-	-	-	-	2724	0.007	894	0.171	894	0.168
1118	U48730 CDS	U21110 CDS	X97541 CDS	3	2358	0.017	758	0.403	752	0.383	-	-	200	0.210	2358	0.005	778	0.173	777	0.164
1119	U48736 CDS	U48737 CDS	-	3	1488	0.004	492	0.423	488	0.414	-	-	-	-	-	-	-	-	-	-
1120	U48861 CDS	-	M33953 CDS	2	1470	0.100	405	0.457	392	0.363	-	-	-	-	-	-	-	-	-	-
1121	U49089 CDS	D87117 CDS	-	3	2451	0.006	808	0.305	803	0.296	-	-	-	-	-	-	-	-	-	-
1122	U49184 CDS	U49185 CDS	-	3	1557	0.053	471	0.545	457	0.465	-	-	-	-	-	-	-	-	-	-
1123	U49188 CDS	L29441 CDS	-	11	1170	0.229	265	0.627	249	0.402	-	-	-	-	-	-	-	-	-	-
1124	U49250 CDS	U49251 CDS	-	1	2043	0.005	675	0.214	673	0.208	-	-	-	-	-	-	-	-	-	-
1125	U49260 CDS	-	U53706 CDS	12	1200	0.089	338	0.547	326	0.461	-	-	407	0.605	-	-	-	-	-	-
1126	U49352 CDS	-	D00569 CDS	9	1005	0.114	269	0.600	256	0.435	-	-	-	-	-	-	-	-	-	-
1127	U49395 CDS	-	X97328 CDS	3	1236	0.214	283	0.635	263	0.393	-	-	-	-	-	-	-	-	-	-
1128	U49436 CDS	-	L11651 CDS	18	1287	0.016	416	0.269	411	0.237	227	0.050	211	0.054	-	-	-	-	-	-
1129	U49516 CDS	X72230 CDS	M21410 CDS	0	1371	0.062	410	0.528	398	0.431	592	0.168	562	0.222	1368	0.012	445	0.117	447	0.109
1130	U49727 CDS	U29677 CDS	-	0	1065	0.210	244	0.635	228	0.434	-	-	-	-	-	-	-	-	-	-
1131	U49742 CDS	M55171 CDS	U22180 CDS	1	1044	0.028	329	0.550	326	0.500	-	-	-	-	1044	0.016	336	0.236	335	0.222
1132	U49837 CDS	D88791 CDS	X81193 CDS	4	582	0.009	190	0.409	189	0.388	-	-	-	-	582	0.009	190	0.165	190	0.154
1133	U49897 CDS	X51942 CDS	M12337 CDS	3	1356	0.046	416	0.528	407	0.479	-	-	536	0.504	1353	0.010	441	0.141	438	0.126
1134	U50315 CDS	U60453 CDS	-	4	2241	0.011	730	0.433	722	0.413	-	-	-	-	-	-	-	-	-	-
1135	U50553 CDS	L25126 CDS	-	5	1986	0.007	653	0.329	638	0.301	-	-	-	-	-	-	-	-	-	-
1136	U50822 CDS	-	D82074 CDS	2	1068	0.011	348	0.410	344	0.392	-	-	-	-	-	-	-	-	-	-
1137	U50871 CDS	U57324 CDS	AB004454 CDS	10	1344	0.023	428	0.438	424	0.403	-	-	-	-	1344	0.018	432	0.237	430	0.227
1138	U50929 CDS	-	U96133 CDS	2	1218	0.043	374	0.614	361	0.550	-	-	-	-	-	-	-	-	-	-
1139	U50964 CDS	D45022 CDS	L25264 CDS	1	1503	0.005	496	0.306	494	0.294	164	0.219	305	0.200	1503	0.000	501	0.134	501	0.134
1140	U51003 CDS	U51002 CDS	-	0	981	0.023	311	0.409	309	0.376	-	-	-	-	-	-	-	-	-	-
1141	U51095 CDS	M80463 CDS	-	0	567	0.105	154	0.583	148	0.476	-	-	-	-	-	-	-	-	-	-
1142	U51096 CDS	U00454 CDS	-	1	930	0.038	288	0.478	282	0.418	-	-	-	-	-	-	-	-	-	-
1143	U51240 CDS	U51239 CDS	-	3	783	0.129	206	0.586	194	0.398	-	-	-	-	-	-	-	-	-	-
1144	U51243 CDS	AJ011080 CDS	X76456 CDS	1	1797	0.201	407	0.604	381	0.423	-	-	-	-	1797	0.071	521	0.283	507	0.228
1145	U51333 CDS	-	U73859 CDS	4	2769	0.093	785	0.487	748	0.400	-	-	-	-	-	-	-	-	-	-
1146	U51477 CDS	-	D78588 CDS	4	2784	0.016	900	0.481	887	0.444	-	-	-	-	-	-	-	-	-	-
1147	U51677 CDS	X80457 CDS	-	16	645	0.006	212	0.437	210	0.427	-	-	-	-	-	-	-	-	-	-
1148	U51920 CDS	X16319 CDS	-	3	1512	0.002	502	0.387	498	0.366	-	-	-	-	-	-	-	-	-	-
1149	U52111 CDS	Z33637 CDS	-	2	2208	0.044	675	0.489	666	0.448	420	0.240	-	-	-	-	-	-	-	-
1150	U52111 CDS	X81816 CDS	-	14	735	0.054	222	0.337	220	0.313	-	-	-	-	-	-	-	-	-	-
1151	U52111 CDS	U68564 CDS	X74125 CDS	10	1179	0.026	374	0.521	372	0.492	-	-	-	-	1164	0.010	380	0.085	379	0.083
1152	U52111 CDS	X90582 CDS	Z19087 CDS	12	516	0.030	162	0.705	161	0.630	-	-	-	-	516	0.003	171	0.106	171	0.106
1153	U52112 CDS	U53925 CDS	-	3	6096	0.032	1916	0.537	1876	0.479	-	-	-	-	-	-	-	-	-	-
1154	U52112 CDS	X12875 CDS	X59149 CDS	0	3768	0.065	1106	0.493	1080	0.437	-	-	-	-	3756	0.013	1218	0.116	1220	0.114
1155	U52112 CDS	U56773 CDS	-	3	2028	0.128	545	0.507	522	0.370	-	-	-	-	-	-	-	-	-	-
1156	U52112 CDS	-	D10233 CDS	1	1251	0.095	350	0.500	339	0.388	-	-	-	-	-	-	-	-	-	-
1157	U52152 CDS	U11860 CDS	L77929 CDS	0	1128	0.018	366	0.388	364	0.362	-	-	-	-	1128	0.011	367	0.133	367	0.133
1158	U52370 CDS	U16242 CDS	X99794 CDS	1	2187	0.287	437	1.007	375	0.476	-	-	-	-	2187	0.079	624	0.223	620	0.187
1159	U52426 CDS	U47323 CDS	-	3	2055	0.017	661	0.300	653	0.276	-	-	-	-	-	-	-	-	-	-
1160	U52427 CDS	-	Z71925 CDS	10	516	0.000	172	0.476	172	0.476	-	-	198	0.488	-	-	-	-	-	-
1161	U53347 CDS	L42115 CDS	-	4	1605	0.140	420	0.801	404	0.584	-	-	-	-	-	-	-	-	-	-
1162	U53454 CDS	U53455 CDS	L26450 CDS	4	708	0.050	213	0.366	212	0.320	-	-	154	0.273	708	0.014	230	0.222	228	0.210
1163	U53476 CDS	M89801 CDS	-	2	1047	0.013	339	0.326	339	0.320	-	-	-	-	-	-	-	-	-	-
1164	U53511 CDS	-	U30290 CDS	0	1038	0.045	317	0.504	312	0.422	-	-	-	-	-	-	-	-	-	-
1165	U53874 CDS	U92562 CDS	U63972 CDS	1	1038	0.080	296	0.372	287	0.297	-	-	-	-	1035	0.023	330	0.149	330	0.143
1166	U54644 CDS	U52433 CDS	-	1	1515	0.020	484	0.300	479	0.279	-	-	-	-	-	-	-	-	-	-
1167	U54804 CDS	U52524 CDS	-	1	1656	0.005	546	0.484	545	0.480	-	-	-	-	-	-	-	-	-	-
1168	U54826 CDS	U74359 CDS	U66478 CDS	10	1395	0.009	458	0.580	451	0.551	-	-	-	-	1395	0.015	452	0.237	447	0.216
1169	U55017 CDS	U05809 CDS	U09256 CDS	14	1869	0.029	590	0.555	577	0.505	-	-	-	-	1869	0.008	613	0.211	610	0.198
1170	U55206 CDS	-	U38379 CDS	10	951	0.237	213	0.538	200	0.330	-	-	-	-	-	-	-	-	-	-
1171	U55258 CDS	-	U81037 CDS	3	3588	0.036	1114	0.494	1084	0.430	-	-	-	-	-	-	-	-	-	-
1172	U55312 CDS	U46923 CDS	U65417 CDS	1	1227	0.062	364	0.798	343	0.711	-	-	-	-	1056	0.014	342	0.238	336	0.223
1173	U55936 CDS	AB000822 CDS	AF052596 CDS	5	630	0.076	182	0.322	179	0.269	-	-	-	-	630	0.010	206	0.158	206	0.158
1174	U56387 CDS	L14932 CDS	L14933 CDS	5	2745	0.018	882	0.444	875	0.430	-	-	-	-	2742	0.009	896	0.175	894	0.173
1175	U56637 CDS	U16740 CDS	-	6	852	0.021	273	0.310	272	0.302	-	-	-	-	-	-	-	-	-	-
1176	U56976 CDS	L01695 CDS	M94537 CDS	2	1605	0.023	513	0.349	509	0.318	-	-	-	-	1605	0.005	529	0.101	528	0.099
1177	U56998 CDS	U21392 CDS	-	3	1770	0.028	559	0.409	556	0.385	-	-	-	-	-	-	-	-	-	-
1178	U57094 CDS	-	D17352 CDS	2	663	0.022	213	0.629	209	0.588	-	-	-	-	-	-	-	-	-	-
1179	U57352 CDS	-	U53211 CDS	2	1536	0.005	507	0.281	502	0.271	152	0.173	855	0.227	-	-	-	-	-	-
1180	U57592 CDS	D31967 CDS	-	2	3690	0.038	1142	0.325	1125	0.284	-	-	-	-	-	-	-	-	-	-
1181	U57650 CDS	U51742 CDS	U55192 CDS	4	3543	0.064	1043	0.544	1015	0.456	-	-	-	-	3543	0.017	1142	0.147	1146	0.138
1182	U57721 CDS	-	U68168 CDS	4	1392	0.086	394	0.469	379	0.396	-	-	-	-	-	-	-	-	-	-
1183	U58130 CDS	U20975 CDS	U10096 CDS	0	3285	0.039	1020	0.500	997	0.441	-	-	-	-	3285	0.012	1069	0.188	1065	0.177
1184	U58681 CDS	U58471 CDS	D82868 CDS	1	1143	0.013	372	0.347	368	0.313	-	-	-	-	1140	0.044	353	0.169	351	0.106
1185	U58766 CDS	M30127 CDS	-	8	813	0.039	252	0.515	248	0.474	-	-	-	-	-	-	-	-	-	-
1186	U59111 CDS	D78274 CDS	-	1	966	0.111	262	0.515	255	0.419	-	-	-	-	-	-	-	-	-	-
1187	U59269 CDS	D82964 CDS	-	0	1731	0.024	556	0.721	541	0.663	-	-	-	-	-	-	-	-	-	-
1188	U59464 CDS	U46155 CDS	-	1	4293	0.019	1380	0.461	1365	0.436	-	-	-	-	-	-	-	-	-	-
1189	U59747 CDS	U59746 CDS	AF096291 CDS	0	579	0.005	191	0.219	188	0.201	-	-	-	-	579	0.003	192	0.061	190	0.051
1190	U59913 CDS	U77638 CDS	-	3	1395	0.010	456	0.360	455	0.351	-	-	-	-	-	-	-	-	-	-
1191	U59919 CDS	D50366 CDS	-	8	2376	0.010	774	0.545	755	0.505	-	-	-	-	-	-	-	-	-	-
1192	U60179 CDS	-	U94321 CDS	0	1092	0.023	349	0.440	339	0.383	-	-	-	-	-	-	-	-	-	-
1193	U60206 CDS	U28726 CDS	-	2	1317	0.031	416	0.498	409	0.420	-	-	-	-	-	-	-	-	-	-
1194	U60289 CDS	U55057 CDS	U66566 CDS	1	4308	0.026	1364	0.459	1339	0.421	-	-	-	-	1596	0.016	515	0.183	510	0.170
1195	U60477 CDS	U07635 CDS	-	9	1242	0.000	414	0.196	410	0.184	-	-	153	0.000	-	-	-	-	-	-
1196	U60800 CDS	U69535 CDS	-	4	2583	0.082	737	0.626	699	0.507	-	-	-	-	-	-	-	-	-	-
1197	U61148 CDS	D43694 CDS	-	0	1053	0.059	312	0.463	299	0.365	-	-	-	-	-	-	-	-	-	-
1198	U61276 CDS	-	L38483 CDS	5	3654	0.019	1173	0.432	1160	0.401	-	-	-	-	-	-	-	-	-	-
1199	U61537 CDS	-	U79661 CDS	2	573	0.082	160	0.206	157	0.158	-	-	-	-	-	-	-	-	-	-
1200	U61538 CDS	-	U39875 CDS	2	585	0.005	193	0.298	190	0.287	-	-	-	-	-	-	-	-	-	-

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