Substitution rate and gene expression pattern in mammals

Genes 1201 to 1300

                                                                        
NbT:      number of tissues where ESTs have been detected (in human). 
LgCDS:    length of the aligned protein coding sequences (CDS).       
Ka:       non-synonymous substitution rate.                           
LgS:      number of synonymous sites.                                 
Ks:       synonymous substitution rate.                               
LgSnd:    number of synonymous sites after having removed doublet substitutions.                                                               
Ks_nd:    synonymous substitution rate without doublet substitutions. 
Lg5'UTR:  length of the aligned 5'UTRs (*).                    
K 5'UTR:  substitution rate within 5'UTRs (*).                 
Lg3'UTR:  length of the aligned 3'UTRs (*).                    
K 3'UTR:  substitution rate within 3'UTRs (*).                 
                                                                             
   (*) UTR data from Makalowski and Boguski (1998) Proc. Natl. Acad. Sci. USA 95:9407-9412                                        
   (**) When both rat and mouse orthologs are available, human/rodent substitution rates are calculated using mouse.

					Human / Rodent (**)										Mouse / Rat
	Human acc. num.	Mouse acc. num.	Rat acc. num.	NbT	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd	Lg5'UTR	K 5'UTR	Lg3'UTR	K 3'UTR	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd
1201	U61849 CDS	U62021 CDS	U18772 CDS	1	1287	0.017	414	0.329	412	0.311	-	-	-	-	1287	0.002	427	0.136	429	0.134
1202	U61981 CDS	L10319 CDS	-	2	3270	0.109	890	0.546	857	0.440	-	-	-	-	-	-	-	-	-	-
1203	U62015 CDS	X56790 CDS	-	4	1131	0.039	349	0.411	345	0.358	-	-	-	-	-	-	-	-	-	-
1204	U62296 CDS	U62297 CDS	U17607 CDS	8	1005	0.019	322	0.328	319	0.310	-	-	-	-	1005	0.013	326	0.104	326	0.105
1205	U62431 CDS	-	L10077 CDS	0	1518	0.099	429	0.515	415	0.396	-	-	-	-	-	-	-	-	-	-
1206	U62433 CDS	-	L31620 CDS	0	1869	0.095	527	0.500	514	0.406	-	-	-	-	-	-	-	-	-	-
1207	U62435 CDS	-	L08227 CDS	0	1479	0.096	417	0.725	405	0.598	-	-	-	-	-	-	-	-	-	-
1208	U62436 CDS	L37663 CDS	L31619 CDS	4	1506	0.035	468	0.516	458	0.486	-	-	-	-	1506	0.003	499	0.105	497	0.099
1209	U62438 CDS	-	J04636 CDS	0	1371	0.077	397	0.896	383	0.781	-	-	-	-	-	-	-	-	-	-
1210	U62631 CDS	L16928 CDS	-	0	2007	0.299	404	0.798	358	0.458	-	-	-	-	-	-	-	-	-	-
1211	U62858 CDS	S80963 CDS	-	2	1272	0.148	318	0.414	298	0.289	-	-	-	-	-	-	-	-	-	-
1212	U62962 CDS	L35556 CDS	-	15	1335	0.000	445	0.442	439	0.424	-	-	-	-	-	-	-	-	-	-
1213	U62967 CDS	-	U10279 CDS	0	1944	0.103	534	0.474	509	0.361	-	-	-	-	-	-	-	-	-	-
1214	U63041 CDS	X15049 CDS	X06564 CDS	4	2040	0.027	641	0.434	635	0.400	-	-	-	-	2040	0.005	672	0.184	673	0.186
1215	U63139 CDS	U66887 CDS	-	4	3936	0.041	1210	0.475	1188	0.431	-	-	-	-	-	-	-	-	-	-
1216	U63295 CDS	Z19579 CDS	-	9	846	0.026	272	0.355	270	0.321	-	-	-	-	-	-	-	-	-	-
1217	U63533 CDS	D42068 CDS	U20283 CDS	8	1779	0.027	563	0.488	551	0.452	-	-	-	-	1779	0.011	581	0.167	580	0.160
1218	U63721 CDS	X86569 CDS	D31873 CDS	3	1941	0.023	615	0.508	608	0.481	-	-	857	0.455	1941	0.012	634	0.106	634	0.105
1219	U63830 CDS	U51907 CDS	-	8	1239	0.103	337	0.315	327	0.218	-	-	-	-	-	-	-	-	-	-
1220	U63834 CDS	Y00864 CDS	D12524 CDS	1	2913	0.098	803	0.577	780	0.470	-	-	2026	0.403	2913	0.039	896	0.218	891	0.194
1221	U63842 CDS	Y09166 CDS	U67777 CDS	0	711	0.056	214	0.594	204	0.499	-	-	-	-	711	0.014	230	0.185	234	0.172
1222	U63963 CDS	X06368 CDS	X61479 CDS	5	2907	0.163	722	0.560	692	0.408	-	-	637	0.500	2907	0.008	955	0.019	960	0.007
1223	U63973 CDS	-	U63971 CDS	0	1689	0.076	485	0.529	467	0.411	-	-	-	-	-	-	-	-	-	-
1224	U64105 CDS	U58203 CDS	-	5	2727	0.066	805	0.449	783	0.367	-	-	-	-	-	-	-	-	-	-
1225	U64198 CDS	U64199 CDS	-	0	2565	0.217	578	0.502	533	0.275	-	-	-	-	-	-	-	-	-	-
1226	U64444 CDS	U64445 CDS	-	13	921	0.016	298	0.565	295	0.529	-	-	-	-	-	-	-	-	-	-
1227	U64791 CDS	X84037 CDS	U08136 CDS	10	3516	0.019	1130	0.448	1111	0.402	-	-	-	-	3504	0.010	1145	0.182	1148	0.178
1228	U64876 CDS	U09563 CDS	-	1	1440	0.011	470	0.280	470	0.274	-	-	-	-	-	-	-	-	-	-
1229	U65019 CDS	U60530 CDS	-	6	1401	0.003	464	0.337	460	0.324	-	-	-	-	-	-	-	-	-	-
1230	U65092 CDS	U65091 CDS	-	2	579	0.116	152	0.467	147	0.331	-	-	-	-	-	-	-	-	-	-
1231	U65406 CDS	-	X72341 CDS	0	1173	0.055	356	0.546	343	0.470	-	-	-	-	-	-	-	-	-	-
1232	U65676 CDS	U78315 CDS	-	6	2097	0.112	569	0.483	549	0.383	-	-	-	-	-	-	-	-	-	-
1233	U65785 CDS	S78797 CDS	U41853 CDS	4	1956	0.049	590	0.459	574	0.396	-	-	-	-	1956	0.022	623	0.197	618	0.185
1234	U65918 CDS	U46694 CDS	-	0	885	0.059	260	0.255	256	0.226	-	-	-	-	-	-	-	-	-	-
1235	U65999 CDS	U58885 CDS	-	5	1104	0.031	345	0.564	337	0.515	-	-	-	-	-	-	-	-	-	-
1236	U66075 CDS	S82462 CDS	L22760 CDS	3	1326	0.060	396	0.590	383	0.503	-	-	-	-	1323	0.028	420	0.204	415	0.174
1237	U66088 CDS	-	U60282 CDS	0	1854	0.094	521	0.788	484	0.619	-	-	-	-	-	-	-	-	-	-
1238	U66197 CDS	U66201 CDS	-	7	729	0.000	243	0.263	243	0.263	-	-	-	-	-	-	-	-	-	-
1239	U66198 CDS	U66202 CDS	-	2	735	0.004	243	0.167	243	0.167	-	-	-	-	-	-	-	-	-	-
1240	U66199 CDS	U66203 CDS	-	1	675	0.016	218	0.188	216	0.173	-	-	-	-	-	-	-	-	-	-
1241	U66200 CDS	U66204 CDS	-	1	741	0.007	243	0.176	242	0.173	-	-	-	-	-	-	-	-	-	-
1242	U66243 CDS	Y13439 CDS	-	1	1101	0.042	339	0.573	332	0.508	-	-	-	-	-	-	-	-	-	-
1243	U66275 CDS	-	U66274 CDS	0	1332	0.063	394	0.646	381	0.554	-	-	-	-	-	-	-	-	-	-
1244	U66464 CDS	Y09010 CDS	-	0	2457	0.093	689	0.531	659	0.427	-	-	-	-	-	-	-	-	-	-
1245	U66468 CDS	-	U66470 CDS	3	837	0.230	180	0.654	166	0.397	-	-	-	-	-	-	-	-	-	-
1246	U66469 CDS	-	U66471 CDS	5	996	0.107	278	0.619	266	0.523	-	-	-	-	-	-	-	-	-	-
1247	U66559 CDS	D83002 CDS	-	0	4827	0.071	1413	0.528	1364	0.404	-	-	-	-	-	-	-	-	-	-
1248	U66615 CDS	U85614 CDS	-	8	3297	0.050	1004	0.541	991	0.480	-	-	-	-	-	-	-	-	-	-
1249	U66617 CDS	U66620 CDS	-	1	1305	0.004	431	0.287	427	0.266	-	-	-	-	-	-	-	-	-	-
1250	U66838 CDS	X84311 CDS	-	4	1263	0.098	353	0.541	336	0.435	-	-	-	-	-	-	-	-	-	-
1251	U67615 CDS	U70015 CDS	-	5	11352	0.083	3227	0.471	3109	0.388	-	-	-	-	-	-	-	-	-	-
1252	U67988 CDS	-	U67987 CDS	4	1824	0.063	551	0.558	536	0.433	-	-	-	-	-	-	-	-	-	-
1253	U68019 CDS	-	U66479 CDS	0	1272	0.004	421	0.374	422	0.365	-	-	-	-	-	-	-	-	-	-
1254	U68063 CDS	X80232 CDS	D49708 CDS	12	864	0.000	288	0.355	282	0.333	-	-	-	-	864	0.000	288	0.150	288	0.150
1255	U68233 CDS	U09416 CDS	U18374 CDS	1	1416	0.059	424	0.721	419	0.640	-	-	-	-	1401	0.037	437	0.317	430	0.234
1256	U69139 CDS	-	U63740 CDS	9	1176	0.018	376	0.334	371	0.297	-	-	-	-	-	-	-	-	-	-
1257	U69883 CDS	-	U69885 CDS	2	1374	0.066	406	0.626	400	0.519	-	-	-	-	-	-	-	-	-	-
1258	U69961 CDS	U80011 CDS	-	1	813	0.008	266	0.337	264	0.332	-	-	-	-	-	-	-	-	-	-
1259	U69962 CDS	-	M77482 CDS	0	2406	0.032	753	0.490	736	0.430	-	-	-	-	-	-	-	-	-	-
1260	U70065 CDS	U71201 CDS	D28508 CDS	0	3237	0.125	871	0.845	811	0.597	-	-	-	-	3240	0.062	978	0.272	960	0.192
1261	U70370 CDS	U54499 CDS	-	1	942	0.022	301	0.364	299	0.344	-	-	-	-	-	-	-	-	-	-
1262	U70426 CDS	U67189 CDS	-	3	603	0.085	170	0.490	163	0.429	-	-	-	-	-	-	-	-	-	-
1263	U70663 CDS	U20344 CDS	-	6	1401	0.051	425	0.402	420	0.358	-	-	-	-	-	-	-	-	-	-
1264	U70732 CDS	-	D10354 CDS	1	1488	0.070	436	0.545	418	0.444	-	-	-	-	-	-	-	-	-	-
1265	U70987 CDS	U78818 CDS	-	1	1440	0.099	400	0.477	382	0.364	-	-	-	-	-	-	-	-	-	-
1266	U71203 CDS	U71205 CDS	-	5	657	0.025	208	0.572	203	0.534	-	-	-	-	-	-	-	-	-	-
1267	U71321 CDS	U36220 CDS	-	3	1368	0.078	397	0.579	382	0.464	-	-	-	-	-	-	-	-	-	-
1268	U71364 CDS	U96700 CDS	-	1	1122	0.193	257	0.580	247	0.386	-	-	-	-	-	-	-	-	-	-
1269	U72391 CDS	Y09535 CDS	U68726 CDS	8	4383	0.033	1372	0.319	1351	0.284	-	-	-	-	4131	0.016	1333	0.156	1324	0.141
1270	U72398 CDS	U10102 CDS	-	4	639	0.088	186	0.346	186	0.230	-	-	-	-	-	-	-	-	-	-
1271	U72621 CDS	-	U72620 CDS	7	1389	0.182	326	0.644	299	0.431	-	-	-	-	-	-	-	-	-	-
1272	U72649 CDS	M64292 CDS	M60921 CDS	3	474	-	-	-	-	-	-	-	-	-	474	0.012	154	0.200	153	0.196
1273	U72671 CDS	U06483 CDS	-	2	2751	0.086	780	0.581	740	0.450	-	-	-	-	-	-	-	-	-	-
1274	U73002 CDS	D87902 CDS	L12384 CDS	9	540	0.000	180	0.251	180	0.251	-	-	394	0.075	540	0.000	180	0.109	180	0.109
1275	U73006 CDS	-	M58758 CDS	5	2493	0.022	797	0.540	771	0.468	-	-	-	-	-	-	-	-	-	-
1276	U73192 CDS	-	X86818 CDS	0	1137	0.010	372	0.476	371	0.467	-	-	-	-	-	-	-	-	-	-
1277	U73304 CDS	U22948 CDS	X55812 CDS	1	1416	0.019	457	0.407	455	0.385	-	-	606	0.289	1416	0.001	471	0.185	472	0.190
1278	U73477 CDS	U73478 CDS	D32209 CDS	4	741	0.052	220	0.399	217	0.364	-	-	-	-	741	0.009	242	0.067	242	0.064
1279	U73960 CDS	U76546 CDS	X77235 CDS	6	600	0.003	199	0.325	195	0.294	-	-	-	-	600	0.000	200	0.080	200	0.080
1280	U74324 CDS	-	L10336 CDS	4	369	-	-	-	-	-	-	-	491	0.391	-	-	-	-	-	-
1281	U75651 CDS	U41285 CDS	-	6	2148	0.007	706	0.428	700	0.406	-	-	-	-	-	-	-	-	-	-
1282	U76010 CDS	U76009 CDS	-	0	1023	0.067	298	0.489	287	0.424	-	-	-	-	-	-	-	-	-	-
1283	U76560 CDS	U69171 CDS	-	3	954	0.040	294	0.436	289	0.403	-	-	-	-	-	-	-	-	-	-
1284	U76833 CDS	Y10007 CDS	-	1	2280	0.056	680	0.351	670	0.287	-	-	-	-	-	-	-	-	-	-
1285	U77352 CDS	-	U72995 CDS	7	4743	0.024	1511	0.430	1488	0.393	-	-	-	-	-	-	-	-	-	-
1286	U77735 CDS	L41495 CDS	-	3	933	0.080	270	0.450	263	0.397	-	-	-	-	-	-	-	-	-	-
1287	U77845 CDS	U77844 CDS	-	1	1407	0.130	367	0.354	351	0.280	-	-	-	-	-	-	-	-	-	-
1288	U77968 CDS	U77967 CDS	-	1	1770	0.073	513	0.561	496	0.467	-	-	-	-	-	-	-	-	-	-
1289	U77970 CDS	U77969 CDS	-	5	2436	0.063	720	0.439	699	0.345	-	-	-	-	-	-	-	-	-	-
1290	U78027 CDS	U58105 CDS	-	2	1977	0.008	648	0.408	641	0.398	176	0.213	362	0.477	-	-	-	-	-	-
1291	U78027 CDS	U58105 CDS	-	11	1347	0.004	445	0.263	445	0.263	-	-	-	-	-	-	-	-	-	-
1292	U78110 CDS	U78109 CDS	-	0	585	0.081	169	0.664	161	0.507	-	-	-	-	-	-	-	-	-	-
1293	U78181 CDS	-	U94403 CDS	1	1578	0.011	516	0.329	513	0.320	-	-	-	-	-	-	-	-	-	-
1294	U78192 CDS	U70622 CDS	-	2	1092	0.015	354	0.412	346	0.370	-	-	-	-	-	-	-	-	-	-
1295	U78313 CDS	U57820 CDS	-	1	732	0.113	195	0.414	191	0.283	-	-	-	-	-	-	-	-	-	-
1296	U78521 CDS	U85489 CDS	-	8	990	0.027	312	0.463	309	0.427	-	-	-	-	-	-	-	-	-	-
1297	U78577 CDS	D86177 CDS	-	3	1494	0.043	455	0.500	446	0.434	-	-	-	-	-	-	-	-	-	-
1298	U78678 CDS	U85089 CDS	U73525 CDS	8	498	-	-	-	-	-	-	-	-	-	498	0.023	158	0.163	158	0.153
1299	U78798 CDS	D84655 CDS	-	3	1566	0.066	463	0.455	454	0.376	-	-	-	-	-	-	-	-	-	-
1300	U78876 CDS	U43187 CDS	-	0	1878	0.017	604	0.373	600	0.359	-	-	-	-	-	-	-	-	-	-

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