Substitution rate and gene expression pattern in mammals

Genes 1601 to 1700

                                                                        
NbT:      number of tissues where ESTs have been detected (in human). 
LgCDS:    length of the aligned protein coding sequences (CDS).       
Ka:       non-synonymous substitution rate.                           
LgS:      number of synonymous sites.                                 
Ks:       synonymous substitution rate.                               
LgSnd:    number of synonymous sites after having removed doublet substitutions.                                                               
Ks_nd:    synonymous substitution rate without doublet substitutions. 
Lg5'UTR:  length of the aligned 5'UTRs (*).                    
K 5'UTR:  substitution rate within 5'UTRs (*).                 
Lg3'UTR:  length of the aligned 3'UTRs (*).                    
K 3'UTR:  substitution rate within 3'UTRs (*).                 
                                                                             
   (*) UTR data from Makalowski and Boguski (1998) Proc. Natl. Acad. Sci. USA 95:9407-9412                                        
   (**) When both rat and mouse orthologs are available, human/rodent substitution rates are calculated using mouse.

					Human / Rodent (**)										Mouse / Rat
	Human acc. num.	Mouse acc. num.	Rat acc. num.	NbT	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd	Lg5'UTR	K 5'UTR	Lg3'UTR	K 3'UTR	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd
1601	L41816 CDS	-	L26288 CDS	7	1110	0.019	360	0.387	356	0.354	-	-	196	0.328	-	-	-	-	-	-
1602	M21494 CDS	X03233 CDS	M10140 CDS	6	1143	0.017	368	0.427	366	0.417	-	-	215	0.463	1143	0.002	379	0.141	379	0.141
1603	J04469 CDS	Z13969 CDS	X59737 CDS	6	1251	0.019	403	0.295	399	0.275	-	-	-	-	1251	0.016	405	0.118	404	0.106
1604	D38293 CDS	-	L07074 CDS	3	1254	0.008	411	0.594	408	0.580	-	-	1829	0.614	-	-	-	-	-	-
1605	M38591 CDS	M16465 CDS	-	12	291	-	-	-	-	-	-	-	276	0.247	-	-	-	-	-	-
1606	M55593 CDS	M84324 CDS	U65656 CDS	8	1980	0.022	632	0.469	624	0.442	-	-	-	-	1980	0.007	650	0.194	650	0.187
1607	L29219 CDS	X57186 CDS	-	10	1449	0.064	430	0.452	420	0.370	-	-	193	0.268	-	-	-	-	-	-
1608	L29217 CDS	-	X94351 CDS	10	1470	0.008	482	0.310	471	0.267	-	-	227	0.158	-	-	-	-	-	-
1609	M65271 CDS	S82419 CDS	-	0	645	-	-	-	-	-	-	-	193	0.686	-	-	-	-	-	-
1610	M65272 CDS	S82426 CDS	-	0	969	0.202	224	0.688	214	0.422	-	-	785	0.478	-	-	-	-	-	-
1611	D55654 CDS	M29462 CDS	-	18	1002	0.020	321	0.389	316	0.362	-	-	-	-	-	-	-	-	-	-
1612	J00119 CDS	J00372 CDS	X00422 CDS	0	1020	0.158	253	0.770	237	0.525	-	-	-	-	1008	0.046	307	0.168	308	0.133
1613	M55682 CDS	U35035 CDS	-	0	1488	0.061	444	0.479	426	0.377	-	-	-	-	-	-	-	-	-	-
1614	D13892 CDS	M60320 CDS	-	10	681	0.031	215	0.393	212	0.362	-	-	731	0.204	-	-	-	-	-	-
1615	L38025 CDS	AF068615 CDS	S54212 CDS	3	1116	0.034	350	0.388	344	0.354	-	-	-	-	1116	0.011	364	0.181	363	0.179
1616	M30773 CDS	S43864 CDS	L03554 CDS	2	510	0.003	169	0.274	169	0.274	-	-	218	0.130	510	0.003	169	0.209	169	0.209
1617	M29551 CDS	M81483 CDS	D90036 CDS	6	1542	0.006	508	0.145	503	0.127	-	-	631	0.140	1542	0.004	510	0.071	511	0.071
1618	D16611 CDS	D16333 CDS	-	3	1062	0.072	306	0.567	295	0.490	-	-	-	-	-	-	-	-	-	-
1619	L34081 CDS	U95215 CDS	D43964 CDS	1	1251	0.224	285	0.615	262	0.401	-	-	208	0.769	1251	0.085	358	0.188	355	0.155
1620	D00682 CDS	D00472 CDS	X62908 CDS	17	498	0.008	164	0.299	164	0.301	-	-	-	-	498	0.003	165	0.091	165	0.091
1621	L32137 CDS	-	X72914 CDS	0	2265	0.056	681	0.720	658	0.608	-	-	-	-	-	-	-	-	-	-
1622	M92934 CDS	M70641 CDS	-	7	1044	0.053	316	0.423	310	0.380	177	0.584	1086	0.266	-	-	-	-	-	-
1623	L34954 CDS	X61675 CDS	M76535 CDS	2	1074	0.102	296	0.605	281	0.447	-	-	-	-	1068	0.035	332	0.200	327	0.176
1624	M21575 CDS	M37831 CDS	J05425 CDS	18	507	-	-	-	-	-	-	-	-	-	507	0.032	157	0.215	155	0.197
1625	M26856 CDS	M64933 CDS	U56853 CDS	0	1458	0.180	353	0.566	322	0.361	-	-	-	-	1458	0.075	424	0.246	417	0.212
1626	L28957 CDS	U84207 CDS	U03490 CDS	6	1101	0.022	352	0.455	349	0.442	-	-	-	-	1101	0.006	362	0.118	362	0.118
1627	M34677 CDS	M83118 CDS	-	3	1086	0.101	304	0.641	289	0.466	-	-	-	-	-	-	-	-	-	-
1628	D90282 CDS	-	M12335 CDS	3	4500	0.029	1417	0.432	1385	0.387	-	-	559	0.496	-	-	-	-	-	-
1629	M97815 CDS	M35523 CDS	-	7	414	-	-	-	-	-	-	-	333	0.443	-	-	-	-	-	-
1630	M86842 CDS	L13791 CDS	-	19	1044	0.081	300	0.398	295	0.339	269	0.177	-	-	-	-	-	-	-	-
1631	M34356 CDS	M95106 CDS	X14788 CDS	6	1023	0.001	340	0.184	334	0.164	-	-	-	-	1023	0.003	339	0.067	339	0.067
1632	D10656 CDS	S72408 CDS	D44481 CDS	3	912	0.007	300	0.185	294	0.152	-	-	288	0.161	912	0.003	302	0.037	301	0.030
1633	M76378 CDS	D88793 CDS	U09567 CDS	3	579	0.002	192	0.458	192	0.458	-	-	749	0.380	579	0.003	192	0.209	192	0.205
1634	M11725 CDS	X13588 CDS	M83176 CDS	3	672	0.196	157	0.748	140	0.490	-	-	812	0.781	663	0.155	164	0.209	161	0.118
1635	M28638 CDS	M73741 CDS	U04320 CDS	12	525	0.011	171	0.333	166	0.291	-	-	176	0.111	525	0.008	172	0.158	172	0.146
1636	M17316 CDS	K02587 CDS	M19359 CDS	0	522	-	-	-	-	-	-	-	-	-	522	0.010	170	0.154	170	0.154
1637	M19364 CDS	Z22573 CDS	M19359 CDS	0	525	-	-	-	-	-	-	-	-	-	525	0.011	171	0.187	168	0.161
1638	M19364 CDS	Z22574 CDS	M19359 CDS	1	522	-	-	-	-	-	-	-	-	-	522	0.022	165	0.156	163	0.137
1639	L35263 CDS	D83073 CDS	-	2	1080	0.004	357	0.504	353	0.475	-	-	-	-	-	-	-	-	-	-
1640	M37435 CDS	M21952 CDS	-	0	1653	0.201	381	0.338	367	0.220	-	-	673	0.769	-	-	-	-	-	-
1641	M14219 CDS	X53929 CDS	Z12298 CDS	17	1062	0.120	288	0.576	272	0.463	-	-	-	-	1062	0.063	311	0.218	307	0.185
1642	L15006 CDS	X05719 CDS	-	0	669	0.170	166	0.489	159	0.331	-	-	-	-	-	-	-	-	-	-
1643	M24400 CDS	-	K02298 CDS	1	789	0.087	223	0.535	212	0.418	-	-	-	-	-	-	-	-	-	-
1644	M14221 CDS	M65270 CDS	X82396 CDS	16	1011	0.126	267	0.644	252	0.501	-	-	733	0.537	1011	0.039	311	0.187	313	0.183
1645	M84424 CDS	X97399 CDS	D38104 CDS	3	1188	0.106	327	0.522	309	0.339	-	-	-	-	1086	0.035	339	0.170	339	0.166
1646	M65188 CDS	M61896 CDS	M19317 CDS	4	1146	0.012	372	0.595	364	0.556	154	0.192	1290	0.659	1146	0.001	381	0.193	381	0.193
1647	M30804 CDS	D00659 CDS	M33986 CDS	2	1509	0.120	399	0.585	379	0.432	-	-	804	0.512	1500	0.043	459	0.231	455	0.185
1648	M22865 CDS	-	D13205 CDS	8	402	-	-	-	-	-	-	-	278	0.393	-	-	-	-	-	-
1649	M64349 CDS	S78355 CDS	D14014 CDS	7	885	0.040	275	0.366	273	0.333	-	-	2598	0.407	885	0.012	289	0.124	289	0.112
1650	L49506 CDS	U95826 CDS	-	4	1032	0.059	306	0.653	290	0.534	-	-	-	-	-	-	-	-	-	-
1651	M15990 CDS	X67677 CDS	-	1	1623	0.021	520	0.365	511	0.322	260	0.775	2269	0.301	-	-	-	-	-	-
1652	M80254 CDS	-	U68544 CDS	8	618	0.064	184	0.323	181	0.285	-	-	-	-	-	-	-	-	-	-
1653	M60857 CDS	M60456 CDS	-	12	624	0.032	195	0.393	189	0.340	-	-	-	-	-	-	-	-	-	-
1654	U29462 CDS	U16297 CDS	-	4	750	0.150	198	0.619	192	0.453	-	-	-	-	-	-	-	-	-	-
1655	D14878 CDS	-	U34843 CDS	11	1008	0.043	311	0.481	305	0.417	-	-	-	-	-	-	-	-	-	-
1656	L12398 CDS	U19880 CDS	U03551 CDS	0	1161	0.132	307	0.461	296	0.319	-	-	-	-	1161	0.026	367	0.161	366	0.152
1657	M30142 CDS	L41366 CDS	-	9	1143	0.470	181	0.816	150	0.318	-	-	-	-	-	-	-	-	-	-
1658	M60527 CDS	X77731 CDS	L33894 CDS	3	780	0.038	243	0.482	235	0.447	-	-	1213	0.518	780	0.034	245	0.246	242	0.225
1659	D26135 CDS	-	D38448 CDS	1	2364	0.063	696	0.424	681	0.357	306	0.431	768	0.312	-	-	-	-	-	-
1660	M16447 CDS	-	J03481 CDS	6	723	0.025	228	0.589	224	0.559	-	-	522	0.501	-	-	-	-	-	-
1661	L32592 CDS	D45850 CDS	-	11	969	0.160	239	0.704	223	0.547	-	-	-	-	-	-	-	-	-	-
1662	M96859 CDS	-	M76426 CDS	3	2577	0.036	800	0.646	777	0.563	-	-	-	-	-	-	-	-	-	-
1663	M91196 CDS	M32489 CDS	-	0	1272	0.053	381	0.548	375	0.492	-	-	-	-	-	-	-	-	-	-
1664	L24544 CDS	L10075 CDS	-	3	2970	0.155	760	0.667	720	0.470	-	-	854	0.856	-	-	-	-	-	-
1665	L08069 CDS	AF055664 CDS	U53922 CDS	14	1191	0.002	395	0.375	390	0.356	-	-	-	-	1191	0.000	397	0.084	397	0.084
1666	M31767 CDS	M84524 CDS	M76704 CDS	5	618	-	-	-	-	-	-	-	-	-	612	0.040	188	0.113	191	0.098
1667	M80397 CDS	Z21848 CDS	AJ222691 CDS	7	3315	0.062	988	0.579	957	0.490	-	-	-	-	3309	0.016	1069	0.203	1059	0.189
1668	L36983 CDS	L31398 CDS	-	1	2598	0.013	844	0.520	838	0.504	-	-	-	-	-	-	-	-	-	-
1669	L24559 CDS	D13546 CDS	-	4	1794	0.101	494	0.608	469	0.486	-	-	309	0.789	-	-	-	-	-	-
1670	D31897 CDS	D50000 CDS	U70779 CDS	2	1200	0.037	373	0.582	367	0.512	-	-	-	-	1194	0.007	393	0.120	395	0.109
1671	D70830 CDS	D85037 CDS	-	0	1236	0.026	390	0.379	388	0.356	-	-	-	-	-	-	-	-	-	-
1672	M20703 CDS	X68670 CDS	-	1	1524	0.124	409	0.603	389	0.481	-	-	-	-	-	-	-	-	-	-
1673	M88700 CDS	-	L33001 CDS	5	1440	0.066	425	0.581	409	0.512	-	-	400	0.455	-	-	-	-	-	-
1674	L24178 CDS	-	M80233 CDS	0	1857	0.035	578	0.481	568	0.434	-	-	1391	0.532	-	-	-	-	-	-
1675	L23959 CDS	X72310 CDS	-	6	1230	0.024	389	0.570	379	0.522	-	-	161	0.424	-	-	-	-	-	-
1676	L76937 CDS	D86527 CDS	-	5	4182	0.180	996	0.504	937	0.375	-	-	-	-	-	-	-	-	-	-
1677	D17530 CDS	-	X59267 CDS	4	1947	0.062	577	0.473	569	0.407	-	-	-	-	-	-	-	-	-	-
1678	D26535 CDS	-	D90401 CDS	1	1323	0.057	401	0.427	393	0.378	-	-	1300	0.453	-	-	-	-	-	-
1679	D16294 CDS	-	X05341 CDS	12	1191	0.071	345	0.605	326	0.491	-	-	256	0.614	-	-	-	-	-	-
1680	U48213 CDS	U29762 CDS	J03179 CDS	6	975	0.044	300	0.564	288	0.485	157	0.373	264	0.298	975	0.005	321	0.062	321	0.062
1681	L23768 CDS	X84234 CDS	M97754 CDS	2	1122	0.018	361	0.299	358	0.280	-	-	-	-	1122	0.006	369	0.112	368	0.104
1682	M80244 CDS	-	U00995 CDS	2	723	0.032	228	0.543	228	0.532	201	0.601	1778	0.801	-	-	-	-	-	-
1683	L31581 CDS	L31580 CDS	-	0	1134	0.072	328	0.484	313	0.394	-	-	745	0.492	-	-	-	-	-	-
1684	M26016 CDS	M35684 CDS	-	0	3063	0.218	678	0.475	637	0.299	-	-	-	-	-	-	-	-	-	-
1685	L07077 CDS	-	K03249 CDS	4	2166	0.141	560	0.572	534	0.483	-	-	855	0.691	-	-	-	-	-	-
1686	M59371 CDS	X78339 CDS	-	6	2925	0.043	900	0.577	878	0.521	-	-	830	0.368	-	-	-	-	-	-
1687	L35545 CDS	L39017 CDS	-	8	705	0.208	160	0.396	152	0.291	-	-	-	-	-	-	-	-	-	-
1688	M31210 CDS	U40811 CDS	U10303 CDS	4	1143	0.037	354	0.493	349	0.461	248	0.310	794	0.776	1140	0.011	372	0.135	374	0.134
1689	J05008 CDS	U35233 CDS	M64711 CDS	2	606	-	-	-	-	-	-	-	-	-	603	0.051	182	0.238	183	0.208
1690	J04617 CDS	M22432 CDS	X63561 CDS	19	1386	0.001	461	0.407	454	0.379	-	-	273	0.049	1386	0.002	461	0.185	456	0.172
1691	M29366 CDS	-	U29339 CDS	6	4017	0.052	1211	0.438	1191	0.385	-	-	-	-	-	-	-	-	-	-
1692	J04076 CDS	X06746 CDS	D83508 CDS	0	1209	0.054	364	0.488	348	0.371	231	0.427	1168	0.213	1209	0.006	398	0.189	410	0.175
1693	J02645 CDS	-	J02646 CDS	8	945	0.004	312	0.271	308	0.260	-	-	402	0.165	-	-	-	-	-	-
1694	L08603 CDS	-	U67863 CDS	0	996	0.039	309	0.499	298	0.458	-	-	-	-	-	-	-	-	-	-
1695	M61893 CDS	M80778 CDS	L25527 CDS	0	1830	0.176	446	0.636	407	0.420	-	-	-	-	1641	0.066	476	0.247	469	0.221
1696	M16652 CDS	X04573 CDS	-	1	807	0.192	201	0.575	185	0.389	-	-	-	-	-	-	-	-	-	-
1697	D30655 CDS	X56953 CDS	-	14	1221	0.003	405	0.271	401	0.258	-	-	639	0.038	-	-	-	-	-	-
1698	M58597 CDS	U33457 CDS	U58860 CDS	0	1293	0.154	323	0.665	310	0.514	-	-	-	-	1293	0.074	374	0.186	370	0.158
1699	M25269 CDS	X87257 CDS	-	2	1281	0.080	365	0.484	357	0.373	-	-	-	-	-	-	-	-	-	-
1700	L47345 CDS	-	L46816 CDS	10	2304	0.091	644	0.541	625	0.454	-	-	311	0.298	-	-	-	-	-	-

If you have problems or comments...

Back to Query home page