Substitution rate and gene expression pattern in mammals

Genes 1701 to 1800

                                                                        
NbT:      number of tissues where ESTs have been detected (in human). 
LgCDS:    length of the aligned protein coding sequences (CDS).       
Ka:       non-synonymous substitution rate.                           
LgS:      number of synonymous sites.                                 
Ks:       synonymous substitution rate.                               
LgSnd:    number of synonymous sites after having removed doublet substitutions.                                                               
Ks_nd:    synonymous substitution rate without doublet substitutions. 
Lg5'UTR:  length of the aligned 5'UTRs (*).                    
K 5'UTR:  substitution rate within 5'UTRs (*).                 
Lg3'UTR:  length of the aligned 3'UTRs (*).                    
K 3'UTR:  substitution rate within 3'UTRs (*).                 
                                                                             
   (*) UTR data from Makalowski and Boguski (1998) Proc. Natl. Acad. Sci. USA 95:9407-9412                                        
   (**) When both rat and mouse orthologs are available, human/rodent substitution rates are calculated using mouse.

					Human / Rodent (**)										Mouse / Rat
	Human acc. num.	Mouse acc. num.	Rat acc. num.	NbT	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd	Lg5'UTR	K 5'UTR	Lg3'UTR	K 3'UTR	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd
1701	M34462 CDS	L46768 CDS	D50568 CDS	3	657	-	-	-	-	-	-	-	-	-	645	0.079	183	0.179	186	0.165
1702	M29399 CDS	L35933 CDS	-	2	2073	0.168	503	0.492	469	0.363	-	-	-	-	-	-	-	-	-	-
1703	M98343 CDS	U03184 CDS	-	4	1638	0.043	504	0.638	486	0.535	-	-	-	-	-	-	-	-	-	-
1704	J00123 CDS	M55181 CDS	S49491 CDS	2	801	0.105	219	0.640	216	0.556	-	-	-	-	801	0.021	256	0.276	258	0.261
1705	K02268 CDS	-	M32784 CDS	0	729	0.232	163	0.526	154	0.293	-	-	-	-	-	-	-	-	-	-
1706	L29766 CDS	U89491 CDS	M26125 CDS	14	1365	0.091	380	0.504	358	0.377	-	-	207	0.656	1365	0.026	430	0.180	424	0.159
1707	M29913 CDS	L77979 CDS	-	0	2145	0.063	637	0.472	618	0.410	-	-	-	-	-	-	-	-	-	-
1708	M60922 CDS	U07890 CDS	-	4	1137	0.003	376	0.440	376	0.437	-	-	-	-	-	-	-	-	-	-
1709	D83485 CDS	M73329 CDS	-	13	1512	0.045	463	0.369	456	0.335	-	-	282	0.120	-	-	-	-	-	-
1710	M28650 CDS	X07414 CDS	-	7	891	0.084	255	0.669	242	0.555	-	-	-	-	-	-	-	-	-	-
1711	M31899 CDS	S71186 CDS	-	12	2346	0.022	749	0.589	740	0.572	-	-	254	0.638	-	-	-	-	-	-
1712	L20046 CDS	U40795 CDS	-	11	3468	0.206	802	0.681	748	0.443	-	-	-	-	-	-	-	-	-	-
1713	D21205 CDS	D63902 CDS	-	0	1881	0.182	463	0.636	436	0.480	-	-	-	-	-	-	-	-	-	-
1714	D31661 CDS	L25890 CDS	-	3	2889	0.005	954	0.441	947	0.422	-	-	-	-	-	-	-	-	-	-
1715	M12674 CDS	M38651 CDS	-	3	1785	0.061	532	0.515	518	0.448	-	-	-	-	-	-	-	-	-	-
1716	J05016 CDS	J05186 CDS	-	12	1914	0.061	565	0.465	551	0.368	-	-	324	0.388	-	-	-	-	-	-
1717	M11319 CDS	M12930 CDS	-	1	576	0.133	151	0.557	145	0.442	-	-	553	0.549	-	-	-	-	-	-
1718	M65199 CDS	X59556 CDS	-	0	480	-	-	-	-	-	-	-	641	0.451	-	-	-	-	-	-
1719	M62831 CDS	L26490 CDS	-	3	657	0.131	173	0.684	167	0.530	-	-	719	0.456	-	-	-	-	-	-
1720	M62829 CDS	M28845 CDS	J04154 CDS	5	1596	0.035	494	0.505	481	0.452	269	0.262	1236	0.160	1512	0.010	493	0.135	493	0.126
1721	J04102 CDS	J04103 CDS	-	8	1401	0.042	429	0.660	419	0.574	-	-	-	-	-	-	-	-	-	-
1722	L02664 CDS	L08266 CDS	-	2	1662	0.213	371	0.470	351	0.325	-	-	-	-	-	-	-	-	-	-
1723	M18079 CDS	M65034 CDS	-	0	396	-	-	-	-	-	-	-	153	0.562	-	-	-	-	-	-
1724	M94856 CDS	X70100 CDS	-	13	405	-	-	-	-	-	-	-	200	0.300	-	-	-	-	-	-
1725	M88648 CDS	L05573 CDS	-	2	6927	0.162	1705	0.374	1637	0.265	176	0.329	-	-	-	-	-	-	-	-
1726	L09229 CDS	U15977 CDS	D90109 CDS	7	2091	0.094	578	0.470	552	0.376	-	-	-	-	2091	0.027	658	0.203	657	0.195
1727	M55150 CDS	M84145 CDS	M77694 CDS	10	1257	0.059	373	0.636	358	0.539	-	-	-	-	1257	0.012	408	0.172	407	0.170
1728	L13616 CDS	M95408 CDS	S83358 CDS	9	3156	0.014	1023	0.395	1007	0.360	-	-	375	0.406	3156	0.005	1040	0.105	1040	0.105
1729	J05262 CDS	-	M34477 CDS	16	1059	0.089	300	0.473	293	0.378	-	-	-	-	-	-	-	-	-	-
1730	M67454 CDS	M83649 CDS	D26112 CDS	4	975	0.373	166	0.878	152	0.368	-	-	-	-	966	0.245	201	0.293	193	0.173
1731	M14766 CDS	X64223 CDS	X73579 CDS	0	921	0.303	176	0.670	160	0.388	-	-	163	0.519	852	0.068	249	0.282	265	0.239
1732	M33195 CDS	J05020 CDS	-	7	258	-	-	-	-	-	-	-	311	0.564	-	-	-	-	-	-
1733	L37374 CDS	L26320 CDS	-	8	1134	0.024	362	0.389	358	0.352	-	-	-	-	-	-	-	-	-	-
1734	D00726 CDS	M61215 CDS	-	4	1260	0.065	371	0.410	361	0.342	-	-	1074	0.531	-	-	-	-	-	-
1735	M14212 CDS	X52561 CDS	-	19	546	0.039	169	0.334	168	0.313	-	-	-	-	-	-	-	-	-	-
1736	M10119 CDS	J04716 CDS	J02741 CDS	18	525	-	-	-	-	-	189	0.360	-	-	525	0.022	167	0.125	173	0.108
1737	D14838 CDS	U33535 CDS	D14839 CDS	1	624	0.005	206	0.340	206	0.340	173	0.176	280	0.195	621	0.003	206	0.084	206	0.084
1738	M30492 CDS	U36459 CDS	X14232 CDS	3	465	-	-	-	-	-	-	-	462	0.294	465	0.000	155	0.168	155	0.168
1739	M27968 CDS	M30644 CDS	M22427 CDS	2	462	-	-	-	-	-	-	-	-	-	462	0.009	151	0.139	151	0.139
1740	L03840 CDS	X59927 CDS	-	4	2397	0.059	716	0.528	690	0.451	-	-	475	0.638	-	-	-	-	-	-
1741	M19722 CDS	X16440 CDS	X57018 CDS	1	1551	0.084	445	0.503	425	0.371	-	-	-	-	1551	0.033	488	0.189	486	0.172
1742	M64982 CDS	-	X86561 CDS	5	2337	0.171	578	0.597	546	0.380	-	-	-	-	-	-	-	-	-	-
1743	M64983 CDS	-	U05675 CDS	5	1431	0.107	389	0.678	366	0.512	-	-	-	-	-	-	-	-	-	-
1744	L13923 CDS	L29454 CDS	-	7	8613	0.021	2746	0.472	2708	0.435	-	-	891	0.221	-	-	-	-	-	-
1745	J02770 CDS	U47810 CDS	-	8	1746	0.210	399	0.699	379	0.497	-	-	-	-	-	-	-	-	-	-
1746	M92423 CDS	X60203 CDS	-	13	324	-	-	-	-	-	-	-	1100	0.186	-	-	-	-	-	-
1747	L12141 CDS	X74938 CDS	-	1	1041	0.070	302	0.557	293	0.441	-	-	-	-	-	-	-	-	-	-
1748	M93255 CDS	X59421 CDS	-	1	1350	0.022	431	0.376	423	0.339	228	0.080	-	-	-	-	-	-	-	-
1749	L44140 CDS	U79753 CDS	X98377 CDS	5	759	0.145	193	0.679	182	0.496	-	-	-	-	759	0.033	237	0.075	243	0.070
1750	L44140 CDS	Z11911 CDS	X07467 CDS	5	1545	0.034	481	0.524	473	0.469	-	-	599	0.500	1545	0.007	508	0.140	506	0.136
1751	L44140 CDS	U07950 CDS	U07952 CDS	10	969	0.017	312	0.408	306	0.348	-	-	-	-	969	0.010	317	0.117	317	0.117
1752	L44140 CDS	M93980 CDS	-	18	642	0.002	213	0.492	211	0.481	-	-	-	-	-	-	-	-	-	-
1753	M64082 CDS	U87456 CDS	M84719 CDS	5	1596	0.101	443	0.435	426	0.337	-	-	317	0.514	1596	0.027	502	0.211	498	0.194
1754	L37080 CDS	U90535 CDS	-	2	1599	0.089	448	0.481	434	0.374	-	-	-	-	-	-	-	-	-	-
1755	L29074 CDS	L23971 CDS	U60145 CDS	0	1842	0.018	593	0.181	592	0.172	-	-	-	-	1650	0.010	538	0.076	537	0.070
1756	M19481 CDS	Z29532 CDS	M31591 CDS	4	948	0.011	310	0.382	306	0.362	-	-	-	-	948	0.004	313	0.206	339	0.197
1757	M98045 CDS	U32197 CDS	-	3	1635	0.102	451	0.532	434	0.407	-	-	-	-	-	-	-	-	-	-
1758	K00650 CDS	V00727 CDS	X06769 CDS	13	1140	0.033	356	0.449	348	0.409	-	-	-	-	1140	0.016	368	0.126	365	0.111
1759	L10820 CDS	L22181 CDS	-	5	1050	0.153	268	0.728	253	0.553	-	-	-	-	-	-	-	-	-	-
1760	L00635 CDS	-	M69056 CDS	3	1311	0.019	422	0.429	416	0.400	-	-	234	0.301	-	-	-	-	-	-
1761	L34075 CDS	-	U11681 CDS	5	7647	0.006	2521	0.408	2484	0.383	-	-	209	0.236	-	-	-	-	-	-
1762	L76159 CDS	U62105 CDS	-	6	774	0.016	250	0.455	247	0.430	-	-	-	-	-	-	-	-	-	-
1763	L37882 CDS	-	L02530 CDS	1	1695	0.013	552	0.335	552	0.327	-	-	-	-	-	-	-	-	-	-
1764	L10413 CDS	D49744 CDS	M81225 CDS	10	1131	0.037	349	0.454	341	0.412	-	-	471	0.454	1131	0.008	371	0.199	371	0.193
1765	M80815 CDS	-	X16145 CDS	11	1371	0.124	365	0.535	348	0.404	-	-	-	-	-	-	-	-	-	-
1766	M15502 CDS	-	J04473 CDS	12	1401	0.022	449	0.595	436	0.519	-	-	-	-	-	-	-	-	-	-
1767	L29433 CDS	-	X79807 CDS	6	1446	0.165	361	0.803	340	0.585	-	-	-	-	-	-	-	-	-	-
1768	L22647 CDS	Y07611 CDS	U68037 CDS	0	1203	0.088	341	0.596	321	0.483	-	-	-	-	1203	0.022	384	0.137	387	0.137
1769	M92844 CDS	L42317 CDS	-	9	954	0.076	273	0.460	265	0.382	-	-	681	0.350	-	-	-	-	-	-
1770	L49169 CDS	M77748 CDS	-	0	1014	0.023	323	0.328	323	0.326	-	-	-	-	-	-	-	-	-	-
1771	L13391 CDS	U67187 CDS	-	7	633	0.029	199	0.477	199	0.462	-	-	-	-	-	-	-	-	-	-
1772	L22075 CDS	M63660 CDS	-	0	1131	0.019	364	0.378	362	0.351	-	-	221	0.240	-	-	-	-	-	-
1773	M35543 CDS	L78075 CDS	-	10	573	0.000	191	0.158	191	0.158	-	-	-	-	-	-	-	-	-	-
1774	M63904 CDS	M80632 CDS	-	1	1122	0.080	317	0.905	300	0.712	-	-	-	-	-	-	-	-	-	-
1775	M93036 CDS	M76124 CDS	AJ001044 CDS	9	939	0.119	255	0.774	243	0.620	-	-	398	0.428	939	0.049	285	0.324	283	0.287
1776	M62400 CDS	-	X95579 CDS	2	1419	0.031	447	0.503	439	0.459	-	-	385	0.506	-	-	-	-	-	-
1777	M86868 CDS	-	D38494 CDS	0	1395	0.050	423	0.412	416	0.364	-	-	-	-	-	-	-	-	-	-
1778	L32961 CDS	-	U29701 CDS	1	1476	0.089	424	0.576	410	0.441	-	-	-	-	-	-	-	-	-	-
1779	M82919 CDS	U14420 CDS	X15468 CDS	4	1419	0.013	460	0.314	455	0.296	-	-	159	0.087	1419	0.001	472	0.117	470	0.113
1780	L24498 CDS	U00937 CDS	L39010 CDS	2	495	0.025	156	0.451	152	0.414	173	0.507	541	0.155	495	0.018	161	0.250	161	0.237
1781	M81882 CDS	L16980 CDS	M72422 CDS	0	1755	0.021	560	0.410	554	0.376	-	-	163	0.660	1755	0.009	575	0.180	572	0.172
1782	L16888 CDS	Y12257 CDS	M76177 CDS	6	1779	0.018	572	0.361	566	0.332	181	0.367	1214	0.234	1779	0.005	586	0.129	584	0.123
1783	L38559 CDS	D38557 CDS	-	3	2004	0.095	558	0.541	540	0.427	-	-	-	-	-	-	-	-	-	-
1784	L41668 CDS	-	X53949 CDS	8	1038	0.069	303	0.400	298	0.319	-	-	-	-	-	-	-	-	-	-
1785	M96264 CDS	U41282 CDS	-	5	1080	0.050	329	0.448	322	0.406	-	-	-	-	-	-	-	-	-	-
1786	D63998 CDS	X61172 CDS	M24353 CDS	5	3426	0.117	925	0.591	872	0.452	-	-	-	-	1461	0.032	457	0.246	448	0.184
1787	L36592 CDS	-	U37540 CDS	0	1947	0.078	559	0.530	545	0.454	-	-	942	0.583	-	-	-	-	-	-
1788	L10665 CDS	-	S80376 CDS	3	1143	0.007	377	0.428	372	0.401	-	-	-	-	-	-	-	-	-	-
1789	M23379 CDS	-	L13151 CDS	8	3114	0.023	996	0.319	980	0.276	-	-	-	-	-	-	-	-	-	-
1790	J04038 CDS	M32599 CDS	-	19	999	0.034	313	0.374	309	0.357	-	-	203	0.405	-	-	-	-	-	-
1791	L10822 CDS	-	X79209 CDS	0	1122	0.155	291	0.730	277	0.479	-	-	-	-	-	-	-	-	-	-
1792	L13720 CDS	X59846 CDS	D42148 CDS	12	2019	0.110	549	0.763	520	0.611	-	-	308	0.422	2019	0.032	634	0.228	629	0.212
1793	L13698 CDS	X65128 CDS	-	2	1014	0.077	290	0.350	282	0.301	403	0.402	1316	0.327	-	-	-	-	-	-
1794	L03203 CDS	Z38110 CDS	-	4	480	-	-	-	-	-	174	1.055	1126	0.185	-	-	-	-	-	-
1795	L01694 CDS	M63659 CDS	D85760 CDS	1	1137	0.010	372	0.355	369	0.335	-	-	-	-	1137	0.001	378	0.124	378	0.124
1796	M68891 CDS	AB000096 CDS	-	1	1440	0.019	461	0.465	455	0.447	-	-	-	-	-	-	-	-	-	-
1797	L34357 CDS	M98339 CDS	L22761 CDS	1	1299	0.136	346	0.649	336	0.409	-	-	-	-	1299	0.111	362	0.368	359	0.166
1798	M55543 CDS	M63961 CDS	-	5	1767	0.182	420	0.539	393	0.350	-	-	169	0.742	-	-	-	-	-	-
1799	L36861 CDS	L36860 CDS	-	1	603	0.047	182	0.808	177	0.716	-	-	-	-	-	-	-	-	-	-
1800	J03059 CDS	M24119 CDS	-	7	1545	0.081	445	0.553	422	0.426	-	-	-	-	-	-	-	-	-	-

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