Substitution rate and gene expression pattern in mammals

Genes 1801 to 1900

                                                                        
NbT:      number of tissues where ESTs have been detected (in human). 
LgCDS:    length of the aligned protein coding sequences (CDS).       
Ka:       non-synonymous substitution rate.                           
LgS:      number of synonymous sites.                                 
Ks:       synonymous substitution rate.                               
LgSnd:    number of synonymous sites after having removed doublet substitutions.                                                               
Ks_nd:    synonymous substitution rate without doublet substitutions. 
Lg5'UTR:  length of the aligned 5'UTRs (*).                    
K 5'UTR:  substitution rate within 5'UTRs (*).                 
Lg3'UTR:  length of the aligned 3'UTRs (*).                    
K 3'UTR:  substitution rate within 3'UTRs (*).                 
                                                                             
   (*) UTR data from Makalowski and Boguski (1998) Proc. Natl. Acad. Sci. USA 95:9407-9412                                        
   (**) When both rat and mouse orthologs are available, human/rodent substitution rates are calculated using mouse.

					Human / Rodent (**)										Mouse / Rat
	Human acc. num.	Mouse acc. num.	Rat acc. num.	NbT	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd	Lg5'UTR	K 5'UTR	Lg3'UTR	K 3'UTR	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd
1801	D25542 CDS	-	D25543 CDS	9	9423	0.145	2371	0.626	2213	0.459	-	-	-	-	-	-	-	-	-	-
1802	M90656 CDS	U85414 CDS	-	5	1911	0.034	598	0.499	582	0.442	-	-	221	0.344	-	-	-	-	-	-
1803	L35546 CDS	U95053 CDS	S65555 CDS	6	822	0.020	264	0.320	261	0.303	-	-	468	0.305	822	0.005	271	0.197	271	0.197
1804	L43494 CDS	X84235 CDS	U53883 CDS	3	1065	0.049	322	0.483	315	0.390	-	-	-	-	1065	0.038	328	0.234	321	0.184
1805	M62302 CDS	M62301 CDS	-	0	1068	0.194	252	0.684	238	0.508	-	-	-	-	-	-	-	-	-	-
1806	M62302 CDS	M62301 CDS	-	0	1050	0.109	283	0.721	261	0.474	-	-	-	-	-	-	-	-	-	-
1807	M18377 CDS	X57024 CDS	X14223 CDS	10	1674	0.013	546	0.302	540	0.273	-	-	1190	0.272	1674	0.006	551	0.201	550	0.194
1808	L19063 CDS	U36449 CDS	L15305 CDS	0	633	0.044	196	0.291	192	0.257	-	-	-	-	633	0.004	209	0.087	209	0.087
1809	M90516 CDS	U00932 CDS	-	5	2043	0.007	674	0.419	664	0.399	-	-	-	-	-	-	-	-	-	-
1810	L25441 CDS	-	L24116 CDS	0	1131	0.014	367	0.438	364	0.427	-	-	412	0.311	-	-	-	-	-	-
1811	J03071 CDS	Z46663 CDS	J00739 CDS	3	645	-	-	-	-	-	-	-	-	-	645	0.018	207	0.128	207	0.124
1812	M28466 CDS	M33324 CDS	J04811 CDS	3	1911	0.186	441	0.389	427	0.260	-	-	828	0.287	1896	0.059	565	0.166	570	0.152
1813	L01406 CDS	-	L01407 CDS	1	1269	0.108	346	0.499	330	0.400	-	-	226	0.550	-	-	-	-	-	-
1814	M63154 CDS	L24191 CDS	-	0	1251	0.115	337	0.467	327	0.376	-	-	186	0.504	-	-	-	-	-	-
1815	M96789 CDS	X57971 CDS	M76532 CDS	4	999	0.072	287	0.439	282	0.377	-	-	564	0.484	999	0.012	325	0.189	324	0.177
1816	M15182 CDS	J02836 CDS	-	10	1941	0.150	487	0.700	453	0.508	-	-	160	0.615	-	-	-	-	-	-
1817	M55621 CDS	M73491 CDS	-	6	1335	0.057	401	0.600	396	0.540	207	0.365	967	0.359	-	-	-	-	-	-
1818	M57609 CDS	X95255 CDS	-	5	4782	0.081	1360	0.523	1315	0.443	-	-	-	-	-	-	-	-	-	-
1819	L33801 CDS	-	X73653 CDS	6	1260	0.006	415	0.310	410	0.288	-	-	-	-	-	-	-	-	-	-
1820	L20316 CDS	L38613 CDS	-	1	1431	0.115	390	0.530	370	0.406	-	-	-	-	-	-	-	-	-	-
1821	M64752 CDS	X57497 CDS	X17184 CDS	0	2721	0.010	890	0.465	875	0.422	-	-	-	-	2721	0.010	893	0.178	889	0.158
1822	M91463 CDS	M23383 CDS	X14771 CDS	0	1512	0.034	474	0.486	467	0.437	-	-	-	-	1512	0.015	489	0.139	490	0.131
1823	M55531 CDS	-	D28562 CDS	4	1500	0.113	409	0.719	387	0.604	-	-	571	0.692	-	-	-	-	-	-
1824	K03195 CDS	M22998 CDS	M22063 CDS	8	1476	0.018	477	0.438	471	0.414	228	0.745	858	0.153	1476	0.005	487	0.152	487	0.152
1825	L20859 CDS	M73696 CDS	-	4	2031	0.054	614	0.378	603	0.318	398	0.219	788	0.249	-	-	-	-	-	-
1826	L20852 CDS	-	L19931 CDS	4	1953	0.040	604	0.806	580	0.684	243	0.206	-	-	-	-	-	-	-	-
1827	L13943 CDS	U48403 CDS	D16102 CDS	3	1572	0.013	510	0.341	509	0.338	-	-	401	0.358	1572	0.003	520	0.150	518	0.147
1828	M14636 CDS	-	X63515 CDS	5	2541	0.033	792	0.493	773	0.439	-	-	-	-	-	-	-	-	-	-
1829	L40027 CDS	-	X53427 CDS	9	1449	0.016	470	0.316	460	0.285	-	-	558	0.151	-	-	-	-	-	-
1830	L01439 CDS	U34359 CDS	-	4	570	-	-	-	-	-	-	-	306	0.434	-	-	-	-	-	-
1831	M27543 CDS	-	M20713 CDS	9	1062	0.006	349	0.314	349	0.314	-	-	1882	0.276	-	-	-	-	-	-
1832	J03260 CDS	-	J03773 CDS	2	1065	0.008	349	0.388	346	0.372	-	-	-	-	-	-	-	-	-	-
1833	M17219 CDS	-	M17527 CDS	4	1047	0.003	347	0.701	344	0.692	-	-	-	-	-	-	-	-	-	-
1834	L13857 CDS	Z11574 CDS	-	8	3954	0.011	1290	0.365	1269	0.336	-	-	-	-	-	-	-	-	-	-
1835	L13858 CDS	Z11664 CDS	-	5	3888	0.027	1229	0.493	1198	0.432	-	-	-	-	-	-	-	-	-	-
1836	D26607 CDS	U53142 CDS	-	3	3600	0.031	1131	0.443	1104	0.392	-	-	-	-	-	-	-	-	-	-
1837	L03380 CDS	L01119 CDS	U92471 CDS	0	981	0.057	292	0.602	284	0.511	-	-	-	-	981	0.019	314	0.227	313	0.220
1838	M60162 CDS	M36778 CDS	-	3	1062	0.010	347	0.288	346	0.275	-	-	-	-	-	-	-	-	-	-
1839	M60164 CDS	M36777 CDS	M17526 CDS	6	1062	0.010	347	0.235	347	0.232	-	-	-	-	1062	0.003	352	0.093	352	0.093
1840	L32831 CDS	D21062 CDS	-	0	990	0.031	309	0.311	307	0.292	494	0.406	983	0.204	-	-	-	-	-	-
1841	M75161 CDS	D16195 CDS	M97750 CDS	12	1767	0.163	441	0.637	423	0.488	-	-	306	0.336	1764	0.069	510	0.167	506	0.142
1842	D43772 CDS	M94450 CDS	-	3	1593	0.053	481	0.495	471	0.447	188	0.349	386	0.352	-	-	-	-	-	-
1843	L15388 CDS	-	U34841 CDS	6	1770	0.024	561	0.447	553	0.418	182	0.167	353	0.264	-	-	-	-	-	-
1844	L15189 CDS	D17666 CDS	S75280 CDS	15	2037	0.009	667	0.442	661	0.419	-	-	-	-	2037	0.007	669	0.160	668	0.156
1845	M19645 CDS	D78645 CDS	M14050 CDS	13	1959	0.014	636	0.342	633	0.330	-	-	358	0.125	1959	0.005	647	0.183	645	0.178
1846	M73481 CDS	M61000 CDS	X56661 CDS	0	1149	0.059	345	0.390	337	0.343	329	0.498	170	0.596	1149	0.013	372	0.135	369	0.118
1847	M63509 CDS	-	L35330 CDS	8	654	0.081	185	0.468	181	0.389	-	-	446	0.766	-	-	-	-	-	-
1848	J05459 CDS	U24428 CDS	U86635 CDS	13	672	0.065	197	0.473	194	0.372	-	-	-	-	672	0.014	217	0.156	217	0.147
1849	M20681 CDS	U11853 CDS	U17978 CDS	4	1479	0.107	411	0.674	389	0.530	-	-	-	-	1479	0.026	466	0.260	463	0.244
1850	M69013 CDS	U37413 CDS	-	10	1077	0.017	349	0.676	345	0.636	-	-	-	-	-	-	-	-	-	-
1851	L47176 CDS	-	M22400 CDS	6	1737	0.033	541	0.351	535	0.316	-	-	299	0.248	-	-	-	-	-	-
1852	M95174 CDS	U60528 CDS	-	1	345	-	-	-	-	-	-	-	209	0.679	-	-	-	-	-	-
1853	L76200 CDS	U53514 CDS	-	14	591	0.074	173	0.720	168	0.625	-	-	-	-	-	-	-	-	-	-
1854	M60094 CDS	X72805 CDS	M13170 CDS	0	609	-	-	-	-	-	-	-	-	-	609	0.030	190	0.223	193	0.215
1855	L19314 CDS	D16464 CDS	L04527 CDS	3	840	0.012	274	0.335	274	0.324	-	-	-	-	840	0.006	276	0.077	275	0.067
1856	M92444 CDS	U12273 CDS	L27076 CDS	14	951	0.029	299	0.612	295	0.570	-	-	151	0.628	948	0.011	309	0.172	309	0.173
1857	D43704 CDS	U20372 CDS	-	5	1452	0.010	475	0.310	474	0.300	-	-	953	0.292	-	-	-	-	-	-
1858	M94055 CDS	-	X03639 CDS	3	6012	0.013	1957	0.599	1901	0.547	-	-	-	-	-	-	-	-	-	-
1859	M60278 CDS	U39192 CDS	L05489 CDS	7	624	0.114	168	0.484	155	0.348	-	-	867	0.235	624	0.041	192	0.132	192	0.132
1860	L20814 CDS	L32204 CDS	X54655 CDS	2	2649	0.002	879	0.287	873	0.274	158	0.155	518	0.056	2649	0.002	880	0.115	880	0.114
1861	D29990 CDS	M62838 CDS	-	3	1974	0.053	593	0.543	579	0.483	-	-	-	-	-	-	-	-	-	-
1862	M58600 CDS	U07425 CDS	X74549 CDS	3	1434	0.088	407	0.598	393	0.479	-	-	514	0.550	1434	0.036	448	0.134	446	0.129
1863	L36069 CDS	X80417 CDS	X78461 CDS	0	1278	0.023	409	0.462	407	0.441	-	-	395	0.520	1278	0.007	418	0.174	419	0.168
1864	M16592 CDS	Y00487 CDS	X62345 CDS	3	1509	0.051	452	0.506	441	0.420	223	0.284	278	0.368	1509	0.015	488	0.180	483	0.161
1865	L12392 CDS	U24233 CDS	U18650 CDS	3	9354	0.050	2842	0.509	2759	0.447	-	-	574	0.446	4473	0.034	1407	0.143	1399	0.107
1866	D16431 CDS	D63707 CDS	-	6	711	0.064	211	0.321	206	0.263	-	-	-	-	-	-	-	-	-	-
1867	M83941 CDS	M68513 CDS	U69278 CDS	2	2946	0.022	940	0.532	929	0.495	-	-	-	-	2946	0.012	957	0.215	954	0.203
1868	M97507 CDS	M97506 CDS	-	0	399	-	-	-	-	-	229	0.357	-	-	-	-	-	-	-	-
1869	M97508 CDS	S40532 CDS	-	0	405	-	-	-	-	-	394	0.913	1271	0.248	-	-	-	-	-	-
1870	L38487 CDS	U85259 CDS	-	2	1260	0.019	407	0.332	402	0.309	-	-	-	-	-	-	-	-	-	-
1871	D13168 CDS	U32329 CDS	X57764 CDS	3	1323	0.067	393	0.497	376	0.388	203	0.672	435	0.492	1320	0.017	426	0.166	425	0.166
1872	M23294 CDS	U07742 CDS	-	11	1605	0.160	406	0.586	385	0.370	-	-	-	-	-	-	-	-	-	-
1873	M75126 CDS	J05277 CDS	J04526 CDS	7	2751	0.040	848	0.558	826	0.490	-	-	722	0.391	2751	0.017	885	0.194	879	0.186
1874	M18737 CDS	X62542 CDS	-	4	780	0.217	177	0.497	166	0.341	-	-	-	-	-	-	-	-	-	-
1875	M77235 CDS	-	M27902 CDS	0	6045	0.032	1894	0.400	1863	0.365	-	-	-	-	-	-	-	-	-	-
1876	D21090 CDS	X92411 CDS	-	6	1224	0.051	373	0.405	361	0.328	-	-	-	-	-	-	-	-	-	-
1877	M74525 CDS	U57690 CDS	M62388 CDS	12	456	0.000	152	0.245	152	0.245	-	-	421	0.034	456	0.000	152	0.170	152	0.170
1878	D16626 CDS	L07645 CDS	-	2	1971	0.033	616	0.498	607	0.465	-	-	251	0.519	-	-	-	-	-	-
1879	M64799 CDS	D50096 CDS	S57565 CDS	0	1074	0.096	304	0.502	293	0.391	-	-	-	-	1074	0.025	340	0.169	335	0.145
1880	M75110 CDS	M64688 CDS	L34666 CDS	0	873	0.094	243	0.582	236	0.488	-	-	419	0.816	873	0.024	276	0.166	278	0.161
1881	M63962 CDS	U17282 CDS	J02649 CDS	1	3099	0.011	1012	0.539	997	0.511	-	-	-	-	3099	0.006	1020	0.163	1015	0.158
1882	M95585 CDS	-	S79820 CDS	1	885	0.015	286	0.323	281	0.280	-	-	-	-	-	-	-	-	-	-
1883	D12676 CDS	AB008553 CDS	M68965 CDS	11	1434	0.076	411	0.527	392	0.438	205	0.573	394	0.326	1434	0.031	448	0.221	443	0.207
1884	D29685 CDS	-	J05446 CDS	2	2106	0.048	642	0.636	626	0.551	-	-	-	-	-	-	-	-	-	-
1885	L23808 CDS	M82831 CDS	X98517 CDS	1	1383	0.262	287	0.491	267	0.291	-	-	-	-	1386	0.057	413	0.166	409	0.127
1886	M83665 CDS	-	D84418 CDS	6	627	0.004	207	0.477	207	0.477	-	-	-	-	-	-	-	-	-	-
1887	M86737 CDS	S50213 CDS	L08814 CDS	13	2124	0.021	680	0.583	666	0.507	-	-	360	0.314	1680	0.008	550	0.180	548	0.166
1888	M11058 CDS	-	M29249 CDS	8	2661	0.044	822	0.601	795	0.517	-	-	-	-	-	-	-	-	-	-
1889	D21243 CDS	AF054669 CDS	U05013 CDS	10	945	0.061	279	0.441	276	0.356	-	-	-	-	945	0.025	300	0.114	300	0.100
1890	L35249 CDS	Y12634 CDS	Y12635 CDS	9	1533	0.007	505	0.525	499	0.511	-	-	-	-	1533	0.000	511	0.198	511	0.198
1891	M26679 CDS	Y00208 CDS	L03556 CDS	1	810	0.012	263	0.214	261	0.192	-	-	-	-	690	0.016	224	0.049	224	0.041
1892	M92299 CDS	M26283 CDS	-	0	807	0.007	265	0.188	265	0.188	-	-	-	-	-	-	-	-	-	-
1893	M76732 CDS	X59251 CDS	D83036 CDS	2	879	0.032	275	0.433	272	0.394	-	-	575	0.572	879	0.005	290	0.158	290	0.158
1894	M16937 CDS	Y00436 CDS	-	0	651	0.036	200	0.233	197	0.201	-	-	-	-	-	-	-	-	-	-
1895	D28769 CDS	L33412 CDS	L33413 CDS	1	1209	0.145	314	0.487	298	0.334	-	-	-	-	1206	0.043	369	0.197	364	0.165
1896	L07515 CDS	X99641 CDS	-	3	573	0.011	187	0.315	185	0.291	-	-	-	-	-	-	-	-	-	-
1897	M69197 CDS	M96827 CDS	-	3	1041	0.149	266	0.686	243	0.471	-	-	-	-	-	-	-	-	-	-
1898	M26434 CDS	K01515 CDS	M63983 CDS	6	654	0.017	211	0.255	210	0.242	-	-	543	0.210	654	0.008	214	0.091	214	0.091
1899	D61391 CDS	-	D26073 CDS	11	1068	0.011	349	0.496	346	0.479	-	-	-	-	-	-	-	-	-	-
1900	M24857 CDS	X15848 CDS	-	1	1362	0.011	444	0.465	440	0.445	298	0.225	-	-	-	-	-	-	-	-

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