Substitution rate and gene expression pattern in mammals

Genes 101 to 200

                                                                        
NbT:      number of tissues where ESTs have been detected (in human). 
LgCDS:    length of the aligned protein coding sequences (CDS).       
Ka:       non-synonymous substitution rate.                           
LgS:      number of synonymous sites.                                 
Ks:       synonymous substitution rate.                               
LgSnd:    number of synonymous sites after having removed doublet substitutions.                                                               
Ks_nd:    synonymous substitution rate without doublet substitutions. 
Lg5'UTR:  length of the aligned 5'UTRs (*).                    
K 5'UTR:  substitution rate within 5'UTRs (*).                 
Lg3'UTR:  length of the aligned 3'UTRs (*).                    
K 3'UTR:  substitution rate within 3'UTRs (*).                 
                                                                             
   (*) UTR data from Makalowski and Boguski (1998) Proc. Natl. Acad. Sci. USA 95:9407-9412                                        
   (**) When both rat and mouse orthologs are available, human/rodent substitution rates are calculated using mouse.

					Human / Rodent (**)										Mouse / Rat
	Human acc. num.	Mouse acc. num.	Rat acc. num.	NbT	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd	Lg5'UTR	K 5'UTR	Lg3'UTR	K 3'UTR	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd
101	X56468 CDS	U57312 CDS	D17614 CDS	16	735	0.002	244	0.321	244	0.321	-	-	1026	0.126	735	0.000	245	0.153	245	0.153
102	X95384 CDS	U50631 CDS	-	6	405	-	-	-	-	-	-	-	412	0.627	-	-	-	-	-	-
103	Z86000 CDS	M91000 CDS	X63574 CDS	0	1248	0.089	354	0.553	340	0.443	-	-	-	-	1248	0.020	400	0.229	407	0.209
104	X87176 CDS	X89998 CDS	U37486 CDS	15	2205	0.078	632	0.555	597	0.453	-	-	-	-	2205	0.041	678	0.244	667	0.206
105	X69090 CDS	Z22866 CDS	-	3	4257	0.065	1259	0.591	1228	0.504	-	-	440	0.686	-	-	-	-	-	-
106	X73428 CDS	M60523 CDS	-	7	357	-	-	-	-	-	-	-	484	0.235	-	-	-	-	-	-
107	X56932 CDS	X51528 CDS	X68282 CDS	18	609	0.024	193	0.473	188	0.439	-	-	-	-	609	0.009	199	0.182	198	0.179
108	X66114 CDS	-	U84727 CDS	11	939	0.017	302	0.413	295	0.378	-	-	-	-	-	-	-	-	-	-
109	Z84718 CDS	X98055 CDS	-	5	720	0.107	196	0.534	189	0.435	-	-	163	0.610	-	-	-	-	-	-
110	Z84718 CDS	U48419 CDS	-	5	729	0.160	187	0.602	179	0.413	-	-	291	0.531	-	-	-	-	-	-
111	X93510 CDS	Y08361 CDS	X76454 CDS	5	981	0.075	286	0.593	275	0.458	-	-	-	-	981	0.024	313	0.166	314	0.162
112	Z11694 CDS	D10939 CDS	-	7	1074	0.005	355	0.313	354	0.296	168	0.572	218	0.182	-	-	-	-	-	-
113	Y07593 CDS	Y10320 CDS	-	3	1095	0.057	328	0.711	313	0.611	-	-	-	-	-	-	-	-	-	-
114	X81411 CDS	Z18278 CDS	L10072 CDS	0	1071	0.071	311	0.577	304	0.524	-	-	-	-	1071	0.026	338	0.200	335	0.190
115	X55740 CDS	L12059 CDS	J05214 CDS	3	1722	0.060	510	0.399	493	0.324	-	-	913	0.475	1722	0.039	534	0.227	523	0.194
116	X56088 CDS	L23754 CDS	J05430 CDS	0	1509	0.109	409	0.525	391	0.434	-	-	837	0.540	1509	0.036	467	0.200	465	0.183
117	Y00757 CDS	X15830 CDS	M63901 CDS	6	633	0.042	193	0.477	186	0.429	-	-	484	0.271	627	0.013	203	0.105	203	0.112
118	Y11838 CDS	Y13479 CDS	-	4	1035	0.087	292	0.478	286	0.403	-	-	-	-	-	-	-	-	-	-
119	X15357 CDS	L31932 CDS	J05677 CDS	1	3171	0.049	963	0.489	946	0.443	-	-	516	0.553	3171	0.009	1038	0.141	1037	0.139
120	AC002073 CDS	-	D31874 CDS	4	1914	0.036	593	0.422	582	0.373	-	-	1456	0.351	-	-	-	-	-	-
121	AC002077 CDS	M25513 CDS	-	1	1050	0.003	348	0.581	344	0.562	-	-	-	-	-	-	-	-	-	-
122	X65140 CDS	-	D90063 CDS	11	1272	0.080	368	0.452	350	0.344	-	-	280	0.671	-	-	-	-	-	-
123	X66403 CDS	X55718 CDS	X74836 CDS	1	1479	0.062	437	0.698	417	0.579	-	-	-	-	1479	0.018	475	0.152	474	0.144
124	X01715 CDS	M30514 CDS	X74834 CDS	0	1551	0.056	463	0.470	444	0.382	-	-	-	-	1551	0.017	500	0.181	499	0.164
125	X02502 CDS	M17640 CDS	X74832 CDS	1	1371	0.031	430	0.444	421	0.402	-	-	245	0.505	1371	0.009	449	0.181	448	0.168
126	X14830 CDS	M14537 CDS	X74833 CDS	2	1503	0.056	449	0.517	442	0.455	-	-	-	-	1503	0.018	482	0.162	479	0.146
127	X55019 CDS	K02582 CDS	X74835 CDS	0	1551	0.067	453	0.440	439	0.355	-	-	157	0.624	1551	0.022	496	0.166	494	0.162
128	Z33905 CDS	X15788 CDS	-	2	1236	0.024	392	0.441	386	0.413	183	0.717	229	0.395	-	-	-	-	-	-
129	X83504 CDS	U43788 CDS	-	1	768	0.058	229	0.450	216	0.358	-	-	-	-	-	-	-	-	-	-
130	X13839 CDS	X13297 CDS	-	15	1131	0.000	377	0.437	373	0.426	-	-	-	-	-	-	-	-	-	-
131	V01510 CDS	J00612 CDS	J00759 CDS	4	705	0.113	190	0.490	187	0.333	-	-	-	-	705	0.036	220	0.166	218	0.140
132	X65633 CDS	D31952 CDS	-	0	888	0.060	263	0.650	248	0.510	170	0.589	-	-	-	-	-	-	-	-
133	X77533 CDS	M84120 CDS	L10640 CDS	3	1536	0.007	505	0.342	502	0.334	-	-	-	-	1146	0.004	379	0.165	377	0.156
134	X58141 CDS	-	Z49081 CDS	7	2205	0.044	676	0.399	663	0.348	-	-	-	-	-	-	-	-	-	-
135	X53793 CDS	-	D37979 CDS	11	1275	0.021	409	0.521	400	0.486	-	-	-	-	-	-	-	-	-	-
136	Z35309 CDS	U85021 CDS	L26986 CDS	1	3747	0.015	1210	0.416	1197	0.395	759	0.254	-	-	3744	0.005	1234	0.160	1233	0.158
137	U16293 CDS	U76734 CDS	-	0	1122	0.059	333	0.532	320	0.477	-	-	-	-	-	-	-	-	-	-
138	X66503 CDS	L24554 CDS	-	10	1365	0.019	437	0.326	433	0.314	-	-	-	-	-	-	-	-	-	-
139	X62137 CDS	J04036 CDS	J05166 CDS	7	3699	0.046	1145	0.483	1121	0.429	-	-	-	-	3690	0.009	1208	0.174	1205	0.166
140	AF000143 CDS	U27502 CDS	X53052 CDS	0	789	0.005	260	0.162	260	0.162	-	-	-	-	783	0.004	259	0.136	259	0.136
141	AF001550 CDS	M34148 CDS	AB000929 CDS	0	2133	0.276	432	0.607	393	0.298	-	-	-	-	2076	0.069	605	0.189	597	0.156
142	AF041022 CDS	L41631 CDS	M25807 CDS	2	1395	0.038	436	0.521	431	0.471	-	-	-	-	1344	0.028	427	0.200	426	0.170
143	U12775 CDS	L06451 CDS	-	1	390	-	-	-	-	-	-	-	200	0.659	-	-	-	-	-	-
144	X64467 CDS	X13752 CDS	X04959 CDS	3	990	0.059	294	0.406	287	0.357	-	-	-	-	990	0.014	321	0.121	320	0.113
145	X56351 CDS	-	J04044 CDS	14	1920	0.051	577	0.439	565	0.378	-	-	-	-	-	-	-	-	-	-
146	X07292 CDS	S72537 CDS	M63656 CDS	7	1089	0.015	352	0.383	344	0.344	-	-	-	-	1089	0.011	355	0.156	353	0.146
147	U75296 CDS	U14390 CDS	M73714 CDS	7	1452	0.093	404	0.618	391	0.499	-	-	154	0.506	1452	0.032	456	0.299	449	0.263
148	X12447 CDS	J05517 CDS	X04261 CDS	17	1008	0.016	325	0.421	323	0.411	-	-	-	-	1008	0.004	333	0.136	333	0.136
149	Z22535 CDS	Z23154 CDS	D17667 CDS	2	1596	0.010	522	0.405	518	0.389	225	0.279	955	0.333	1596	0.006	526	0.163	526	0.163
150	Y07701 CDS	U35646 CDS	-	13	2625	0.011	856	0.274	847	0.259	-	-	-	-	-	-	-	-	-	-
151	U29926 CDS	D85596 CDS	U90888 CDS	8	2298	0.029	722	0.487	705	0.451	-	-	-	-	2295	0.013	745	0.188	743	0.177
152	X81438 CDS	-	Y13381 CDS	3	2046	0.076	598	0.487	589	0.369	-	-	-	-	-	-	-	-	-	-
153	X13294 CDS	X82327 CDS	-	0	2232	0.043	682	0.306	671	0.259	-	-	-	-	-	-	-	-	-	-
154	X80909 CDS	U48363 CDS	-	18	645	0.005	213	0.478	211	0.467	-	-	-	-	-	-	-	-	-	-
155	X15324 CDS	-	L00094 CDS	10	1425	0.251	304	0.677	278	0.450	-	-	-	-	-	-	-	-	-	-
156	X16609 CDS	M84756 CDS	-	3	5583	0.061	1678	0.530	1646	0.464	-	-	483	0.407	-	-	-	-	-	-
157	X52282 CDS	D78175 CDS	L27339 CDS	2	1605	0.052	484	0.497	466	0.415	-	-	-	-	1605	0.017	517	0.174	517	0.169
158	Z11162 CDS	S37484 CDS	X62295 CDS	2	1077	0.032	339	0.583	334	0.536	257	0.494	798	0.444	1077	0.007	354	0.214	354	0.214
159	X12609 CDS	M29379 CDS	J04793 CDS	1	2727	0.105	752	0.501	719	0.393	168	0.274	672	0.458	2526	0.029	796	0.177	794	0.164
160	U03268 CDS	-	J02752 CDS	9	1980	0.066	578	0.529	557	0.435	-	-	1011	0.579	-	-	-	-	-	-
161	X95694 CDS	X78197 CDS	-	3	1344	0.001	447	0.346	448	0.343	-	-	-	-	-	-	-	-	-	-
162	U14620 CDS	-	X78949 CDS	3	1602	0.025	509	0.412	499	0.384	-	-	164	0.338	-	-	-	-	-	-
163	U07097 CDS	-	M32397 CDS	1	1143	0.125	301	0.521	288	0.389	-	-	397	0.514	-	-	-	-	-	-
164	X91504 CDS	-	X78603 CDS	4	603	0.015	195	0.575	189	0.519	-	-	195	0.335	-	-	-	-	-	-
165	U46569 CDS	-	U16245 CDS	2	795	0.048	241	0.495	232	0.409	-	-	-	-	-	-	-	-	-	-
166	X99753 CDS	-	U83896 CDS	12	1197	0.004	395	0.499	396	0.491	-	-	-	-	-	-	-	-	-	-
167	Z11501 CDS	-	M91590 CDS	8	1227	0.020	392	0.333	385	0.302	-	-	-	-	-	-	-	-	-	-
168	X01630 CDS	M31690 CDS	X12459 CDS	12	1236	0.021	396	0.486	394	0.464	-	-	214	0.269	1236	0.009	405	0.162	403	0.154
169	X65867 CDS	U20225 CDS	-	12	1452	0.040	453	0.554	440	0.488	-	-	-	-	-	-	-	-	-	-
170	X68793 CDS	S47225 CDS	-	5	1392	0.070	406	0.479	390	0.391	-	-	-	-	-	-	-	-	-	-
171	X69532 CDS	X70391 CDS	-	4	2721	0.105	745	0.447	714	0.332	-	-	-	-	-	-	-	-	-	-
172	U96781 CDS	-	M99223 CDS	1	2982	0.017	962	0.396	955	0.379	-	-	-	-	-	-	-	-	-	-
173	X03747 CDS	X16646 CDS	M14137 CDS	14	909	0.036	284	0.445	278	0.376	-	-	1143	0.103	909	0.015	293	0.189	293	0.189
174	X60221 CDS	-	M35052 CDS	15	768	0.105	210	0.382	201	0.321	-	-	292	0.361	-	-	-	-	-	-
175	X83218 CDS	-	D13127 CDS	13	639	0.098	174	0.859	164	0.741	-	-	-	-	-	-	-	-	-	-
176	X72861 CDS	X72862 CDS	S73473 CDS	0	1200	0.123	326	0.511	306	0.383	-	-	-	-	1200	0.027	378	0.136	376	0.124
177	X69117 CDS	-	M87855 CDS	4	2064	0.049	626	0.807	599	0.700	-	-	-	-	-	-	-	-	-	-
178	X64707 CDS	U28917 CDS	X78327 CDS	19	633	0.057	194	0.691	186	0.626	-	-	-	-	633	0.053	195	0.242	192	0.209
179	Z14093 CDS	L47335 CDS	J02827 CDS	11	1323	0.041	407	0.544	400	0.504	-	-	-	-	1320	0.011	430	0.147	428	0.134
180	Z23115 CDS	L35049 CDS	X82537 CDS	4	699	0.013	227	0.230	227	0.217	192	0.189	-	-	699	0.004	231	0.124	231	0.124
181	Z23116 CDS	U10100 CDS	X82537 CDS	3	510	0.010	166	0.254	166	0.247	-	-	-	-	510	0.005	168	0.144	168	0.144
182	U48231 CDS	U47281 CDS	U66107 CDS	0	978	0.164	243	0.570	215	0.328	-	-	-	-	978	0.056	292	0.178	294	0.153
183	X79568 CDS	U49853 CDS	U69673 CDS	0	1356	0.145	346	0.517	329	0.398	-	-	-	-	1356	0.045	411	0.193	406	0.170
184	Z19054 CDS	M90364 CDS	-	8	2343	0.001	780	0.429	765	0.398	-	-	-	-	-	-	-	-	-	-
185	X99404 CDS	M58566 CDS	-	1	1014	0.011	332	0.225	329	0.211	-	-	-	-	-	-	-	-	-	-
186	X72875 CDS	M57890 CDS	-	6	2283	0.092	639	0.479	614	0.398	-	-	-	-	-	-	-	-	-	-
187	X99268 CDS	M63649 CDS	-	0	618	0.016	199	0.222	197	0.203	-	-	-	-	-	-	-	-	-	-
188	X69680 CDS	L26047 CDS	M59967 CDS	0	1092	0.109	299	0.477	292	0.402	-	-	-	-	1092	0.041	333	0.203	330	0.185
189	X92106 CDS	-	D87336 CDS	6	1362	0.032	425	0.321	419	0.289	-	-	-	-	-	-	-	-	-	-
190	X68149 CDS	X71788 CDS	X71463 CDS	0	1116	0.105	309	0.609	295	0.480	-	-	1370	0.543	1116	0.027	352	0.300	349	0.275
191	X62515 CDS	M77174 CDS	-	5	11118	0.082	3172	0.552	3072	0.463	-	-	-	-	-	-	-	-	-	-
192	X83107 CDS	U88091 CDS	-	1	1950	0.048	592	0.373	582	0.323	-	-	-	-	-	-	-	-	-	-
193	X13293 CDS	X70472 CDS	-	9	2094	0.088	598	0.502	576	0.376	-	-	-	-	-	-	-	-	-	-
194	X95152 CDS	U82270 CDS	-	2	9861	0.292	1943	0.548	1804	0.317	-	-	-	-	-	-	-	-	-	-
195	X95190 CDS	-	X95189 CDS	5	2043	0.164	502	0.532	469	0.366	-	-	-	-	-	-	-	-	-	-
196	X78549 CDS	U16805 CDS	-	0	1353	0.113	361	0.498	348	0.405	-	-	-	-	-	-	-	-	-	-
197	U10061 CDS	S69352 CDS	-	0	1014	0.008	332	0.387	330	0.379	-	-	-	-	-	-	-	-	-	-
198	X82324 CDS	M88301 CDS	-	0	1083	0.005	357	0.327	354	0.316	-	-	160	0.353	-	-	-	-	-	-
199	Y00081 CDS	M20572 CDS	M26745 CDS	1	630	-	-	-	-	-	-	-	462	0.275	630	0.070	180	0.139	179	0.121
200	X79535 CDS	-	X03369 CDS	15	1335	0.003	442	0.458	440	0.451	-	-	172	0.808	-	-	-	-	-	-

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