Substitution rate and gene expression pattern in mammals

Genes 1901 to 2000

                                                                        
NbT:      number of tissues where ESTs have been detected (in human). 
LgCDS:    length of the aligned protein coding sequences (CDS).       
Ka:       non-synonymous substitution rate.                           
LgS:      number of synonymous sites.                                 
Ks:       synonymous substitution rate.                               
LgSnd:    number of synonymous sites after having removed doublet substitutions.                                                               
Ks_nd:    synonymous substitution rate without doublet substitutions. 
Lg5'UTR:  length of the aligned 5'UTRs (*).                    
K 5'UTR:  substitution rate within 5'UTRs (*).                 
Lg3'UTR:  length of the aligned 3'UTRs (*).                    
K 3'UTR:  substitution rate within 3'UTRs (*).                 
                                                                             
   (*) UTR data from Makalowski and Boguski (1998) Proc. Natl. Acad. Sci. USA 95:9407-9412                                        
   (**) When both rat and mouse orthologs are available, human/rodent substitution rates are calculated using mouse.

					Human / Rodent (**)										Mouse / Rat
	Human acc. num.	Mouse acc. num.	Rat acc. num.	NbT	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd	Lg5'UTR	K 5'UTR	Lg3'UTR	K 3'UTR	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd
1901	D38073 CDS	X62154 CDS	-	7	2364	0.041	731	0.451	720	0.394	-	-	-	-	-	-	-	-	-	-
1902	L26081 CDS	D85028 CDS	X95286 CDS	2	2313	0.023	736	0.558	725	0.521	-	-	-	-	2313	0.003	766	0.181	766	0.176
1903	M64673 CDS	X61753 CDS	-	8	1509	0.062	449	0.409	443	0.341	157	0.359	277	0.465	-	-	-	-	-	-
1904	M65217 CDS	X61754 CDS	-	3	1548	0.026	491	0.338	490	0.321	-	-	258	0.145	-	-	-	-	-	-
1905	L11706 CDS	U69543 CDS	-	5	2259	0.083	644	0.572	618	0.473	-	-	-	-	-	-	-	-	-	-
1906	D63882 CDS	D58419 CDS	-	0	1020	0.016	329	0.355	329	0.358	-	-	-	-	-	-	-	-	-	-
1907	M27024 CDS	J04633 CDS	-	19	2196	0.004	725	0.515	720	0.497	-	-	545	0.383	-	-	-	-	-	-
1908	J04988 CDS	M18186 CDS	-	18	2151	0.005	709	0.597	702	0.576	-	-	253	0.296	-	-	-	-	-	-
1909	L26336 CDS	M20567 CDS	X15705 CDS	5	1899	0.006	626	0.352	623	0.338	-	-	-	-	1899	0.003	629	0.123	629	0.124
1910	L25665 CDS	X65026 CDS	-	12	1284	0.039	397	0.447	390	0.407	445	0.159	-	-	-	-	-	-	-	-
1911	J02986 CDS	X14849 CDS	-	0	606	0.117	163	0.484	155	0.386	178	0.449	251	0.374	-	-	-	-	-	-
1912	D26350 CDS	Z71173 CDS	X61677 CDS	4	3027	0.026	960	0.835	937	0.759	-	-	-	-	3027	0.013	982	0.178	979	0.173
1913	D26351 CDS	-	L06096 CDS	6	8010	0.026	2542	0.437	2503	0.401	-	-	-	-	-	-	-	-	-	-
1914	M83233 CDS	X64840 CDS	L09656 CDS	1	2046	0.023	651	0.309	638	0.274	196	0.233	208	0.071	2046	0.004	677	0.086	699	0.081
1915	D16480 CDS	-	D16478 CDS	18	2289	0.097	637	0.486	612	0.390	-	-	364	0.392	-	-	-	-	-	-
1916	M83180 CDS	M85151 CDS	M89954 CDS	0	1158	0.041	359	0.348	356	0.317	-	-	622	0.203	1158	0.010	378	0.067	378	0.067
1917	M83181 CDS	U39391 CDS	J05276 CDS	0	1263	0.065	370	0.499	358	0.404	-	-	246	0.601	1263	0.029	395	0.155	395	0.155
1918	D49488 CDS	-	D16339 CDS	0	834	0.068	247	0.486	238	0.377	-	-	299	0.420	-	-	-	-	-	-
1919	L26405 CDS	U29148 CDS	-	2	1077	0.013	352	0.414	349	0.393	-	-	-	-	-	-	-	-	-	-
1920	M36803 CDS	U89889 CDS	-	4	1356	0.159	335	0.440	322	0.302	-	-	-	-	-	-	-	-	-	-
1921	L07033 CDS	U49878 CDS	Y10054 CDS	7	975	0.069	283	0.516	271	0.460	-	-	431	0.511	975	0.024	309	0.239	308	0.222
1922	M35878 CDS	X81581 CDS	M33300 CDS	4	867	0.130	230	0.488	222	0.348	-	-	1306	0.350	864	0.037	267	0.208	264	0.160
1923	M34192 CDS	-	J05031 CDS	10	1263	0.047	383	0.425	371	0.372	-	-	538	0.573	-	-	-	-	-	-
1924	M97796 CDS	-	D10863 CDS	13	402	-	-	-	-	-	-	-	210	0.267	-	-	-	-	-	-
1925	M21188 CDS	-	X67269 CDS	4	3057	0.026	967	0.430	947	0.393	-	-	186	0.285	-	-	-	-	-	-
1926	L35485 CDS	L07921 CDS	-	11	1623	0.123	437	0.633	420	0.460	-	-	-	-	-	-	-	-	-	-
1927	M86752 CDS	U27830 CDS	-	11	1629	0.014	529	0.549	526	0.521	-	-	-	-	-	-	-	-	-	-
1928	M15353 CDS	M61731 CDS	-	10	651	0.008	213	0.241	209	0.227	-	-	1124	0.131	-	-	-	-	-	-
1929	L05072 CDS	M21065 CDS	M34253 CDS	3	975	0.078	277	0.544	267	0.476	178	0.563	833	0.324	972	0.034	303	0.285	304	0.262
1930	M87503 CDS	U51992 CDS	-	4	1161	0.197	275	0.521	261	0.363	-	-	-	-	-	-	-	-	-	-
1931	J03607 CDS	M36120 CDS	-	6	1197	0.095	332	0.471	318	0.391	-	-	-	-	-	-	-	-	-	-
1932	M86826 CDS	U66900 CDS	S46785 CDS	0	1809	0.146	470	0.613	446	0.477	-	-	204	0.817	1809	0.040	559	0.247	550	0.217
1933	M74587 CDS	X81579 CDS	L22979 CDS	3	777	0.198	178	0.817	170	0.595	155	0.568	497	0.431	777	0.023	247	0.180	256	0.178
1934	M62402 CDS	X81584 CDS	M69055 CDS	5	708	0.186	166	0.607	152	0.359	-	-	181	0.533	672	0.030	212	0.156	213	0.151
1935	M62782 CDS	Z95492 CDS	M62781 CDS	3	810	0.027	257	0.328	254	0.294	-	-	658	0.312	810	0.003	268	0.101	268	0.101
1936	M24559 CDS	U06431 CDS	-	1	2076	0.231	447	0.530	413	0.286	-	-	-	-	-	-	-	-	-	-
1937	M22414 CDS	-	X62528 CDS	11	1368	0.153	342	0.551	325	0.390	-	-	159	0.697	-	-	-	-	-	-
1938	M15840 CDS	X04964 CDS	M98820 CDS	3	798	0.201	184	0.507	169	0.303	-	-	490	0.489	798	0.062	233	0.142	232	0.119
1939	M87507 CDS	U04269 CDS	-	3	1197	0.253	245	0.690	216	0.433	-	-	-	-	-	-	-	-	-	-
1940	M27492 CDS	M20658 CDS	M95578 CDS	1	1704	0.203	392	0.769	356	0.446	-	-	-	-	1704	0.081	485	0.280	485	0.240
1941	M11066 CDS	M54934 CDS	M55049 CDS	0	801	0.270	163	0.703	149	0.388	-	-	397	0.607	801	0.105	217	0.219	211	0.142
1942	M26062 CDS	M28052 CDS	-	0	1605	0.287	317	0.619	278	0.336	155	0.481	303	0.609	-	-	-	-	-	-
1943	L19546 CDS	U21795 CDS	-	5	1104	0.170	261	0.418	248	0.322	-	-	365	0.640	-	-	-	-	-	-
1944	J03478 CDS	X06271 CDS	-	0	396	-	-	-	-	-	-	-	363	0.420	-	-	-	-	-	-
1945	M57230 CDS	M83336 CDS	-	5	2748	0.137	705	0.736	659	0.521	-	-	-	-	-	-	-	-	-	-
1946	J04156 CDS	X07962 CDS	-	0	462	-	-	-	-	-	401	0.324	590	0.452	-	-	-	-	-	-
1947	M29696 CDS	M29697 CDS	-	3	1368	0.243	293	0.565	273	0.367	-	-	236	0.613	-	-	-	-	-	-
1948	M99412 CDS	L13239 CDS	U70988 CDS	1	1077	0.197	255	0.486	233	0.326	-	-	-	-	1077	0.072	309	0.200	308	0.184
1949	L39064 CDS	M84746 CDS	-	1	1392	0.284	279	0.539	252	0.282	-	-	195	0.459	-	-	-	-	-	-
1950	L12964 CDS	U02567 CDS	-	0	756	-	-	-	-	-	-	-	501	0.996	-	-	-	-	-	-
1951	L39210 CDS	M98333 CDS	-	14	1542	0.008	506	0.477	504	0.463	-	-	-	-	-	-	-	-	-	-
1952	J05272 CDS	U00978 CDS	-	3	1542	0.020	495	0.406	490	0.376	-	-	-	-	-	-	-	-	-	-
1953	L25851 CDS	U12236 CDS	-	7	3471	0.200	806	0.492	758	0.301	-	-	287	0.499	-	-	-	-	-	-
1954	M13981 CDS	M95525 CDS	M36453 CDS	4	1092	0.126	287	0.454	279	0.341	-	-	-	-	1092	0.025	347	0.181	346	0.169
1955	M13436 CDS	X69619 CDS	M37482 CDS	2	1272	0.018	408	0.378	401	0.350	-	-	-	-	1272	0.002	422	0.111	422	0.111
1956	L08488 CDS	U27295 CDS	-	10	1188	0.107	321	0.744	307	0.595	-	-	-	-	-	-	-	-	-	-
1957	M32972 CDS	J05149 CDS	M29014 CDS	7	4110	0.025	1305	0.617	1272	0.572	-	-	395	0.400	4107	0.007	1351	0.195	1347	0.182
1958	M59911 CDS	D13867 CDS	-	2	3153	0.067	922	0.419	889	0.348	-	-	-	-	-	-	-	-	-	-
1959	D38128 CDS	D26157 CDS	D28966 CDS	0	1155	0.126	305	0.599	282	0.411	-	-	667	0.461	1155	0.024	367	0.174	386	0.160
1960	M58511 CDS	-	U20181 CDS	5	2886	0.037	900	0.294	888	0.268	-	-	-	-	-	-	-	-	-	-
1961	M83221 CDS	M83380 CDS	-	3	1668	0.060	495	0.615	485	0.536	-	-	373	0.397	-	-	-	-	-	-
1962	D50582 CDS	U73626 CDS	U44897 CDS	0	1170	0.019	375	0.446	367	0.410	-	-	-	-	1170	0.005	386	0.121	386	0.121
1963	M14660 CDS	S77713 CDS	-	1	1404	0.267	292	0.560	266	0.333	-	-	-	-	-	-	-	-	-	-
1964	L12002 CDS	U34800 CDS	-	1	3096	0.089	872	0.580	843	0.480	-	-	602	0.589	-	-	-	-	-	-
1965	M88249 CDS	D28812 CDS	S87544 CDS	4	1044	0.151	266	0.632	252	0.438	-	-	-	-	1047	0.066	308	0.188	304	0.180
1966	L38019 CDS	X15373 CDS	J05510 CDS	4	8127	0.010	2653	0.502	2611	0.472	-	-	-	-	8127	0.002	2698	0.179	2728	0.172
1967	J04111 CDS	X12740 CDS	-	10	993	0.016	321	0.353	321	0.337	954	0.336	1195	0.201	-	-	-	-	-	-
1968	M29039 CDS	U20735 CDS	-	5	1032	0.036	321	0.409	315	0.381	292	0.281	496	0.162	-	-	-	-	-	-
1969	L23767 CDS	D28941 CDS	-	5	996	0.066	295	0.523	287	0.423	-	-	-	-	-	-	-	-	-	-
1970	L02750 CDS	M30439 CDS	M26161 CDS	2	1485	0.009	486	0.258	482	0.235	-	-	-	-	1485	0.003	492	0.071	492	0.071
1971	L02752 CDS	M30440 CDS	X16003 CDS	0	1497	0.003	496	0.257	494	0.251	-	-	-	-	1497	0.000	499	0.079	499	0.079
1972	M38217 CDS	M30441 CDS	M30312 CDS	0	1569	0.016	507	0.378	498	0.338	-	-	255	0.143	1563	0.004	516	0.157	518	0.150
1973	L04947 CDS	X59397 CDS	U93306 CDS	5	4050	0.084	1151	0.508	1106	0.395	-	-	-	-	4017	0.025	1277	0.179	1268	0.154
1974	J00124 CDS	M13806 CDS	-	4	1059	0.025	335	0.271	332	0.255	-	-	-	-	-	-	-	-	-	-
1975	M98447 CDS	-	M57263 CDS	0	2442	0.047	744	0.522	727	0.456	-	-	-	-	-	-	-	-	-	-
1976	M60828 CDS	Z22703 CDS	X56551 CDS	1	582	0.027	183	0.295	183	0.286	-	-	-	-	582	0.019	186	0.131	185	0.126
1977	D42052 CDS	Z37164 CDS	-	9	1617	0.020	521	0.504	516	0.478	-	-	-	-	-	-	-	-	-	-
1978	D64137 CDS	U22399 CDS	-	9	873	0.256	178	0.593	165	0.319	-	-	-	-	-	-	-	-	-	-
1979	J04977 CDS	X66323 CDS	-	14	2193	0.134	568	0.399	554	0.311	-	-	286	0.498	-	-	-	-	-	-
1980	M90657 CDS	L15429 CDS	-	13	606	0.122	158	0.441	151	0.297	-	-	314	0.435	-	-	-	-	-	-
1981	L37747 CDS	D50080 CDS	-	4	1758	0.019	563	0.520	563	0.516	222	0.402	756	0.222	-	-	-	-	-	-
1982	M13452 CDS	D49733 CDS	-	14	1542	0.019	493	0.394	486	0.367	-	-	-	-	-	-	-	-	-	-
1983	L34155 CDS	X84013 CDS	U61261 CDS	8	5133	0.137	1322	0.522	1238	0.378	-	-	-	-	5133	0.057	1528	0.231	1515	0.201
1984	M61951 CDS	M15525 CDS	-	6	5358	0.038	1654	0.582	1606	0.512	-	-	-	-	-	-	-	-	-	-
1985	M36682 CDS	X16834 CDS	J02962 CDS	13	744	0.090	211	0.663	201	0.541	-	-	-	-	738	0.061	218	0.273	218	0.194
1986	J04182 CDS	M32015 CDS	M34959 CDS	7	1218	0.244	272	0.694	246	0.495	-	-	796	0.361	1218	0.091	341	0.196	336	0.180
1987	M15395 CDS	M31039 CDS	-	5	2307	0.110	629	0.628	598	0.496	-	-	371	0.550	-	-	-	-	-	-
1988	M55210 CDS	J03484 CDS	-	6	4821	0.040	1490	0.530	1461	0.472	254	0.411	209	0.137	-	-	-	-	-	-
1989	L06110 CDS	-	X61394 CDS	3	1791	0.013	583	0.093	580	0.078	-	-	-	-	-	-	-	-	-	-
1990	D11327 CDS	-	U28356 CDS	1	1077	0.051	327	0.376	320	0.334	-	-	733	0.595	-	-	-	-	-	-
1991	M20470 CDS	-	M19262 CDS	8	633	0.024	201	0.400	201	0.403	-	-	-	-	-	-	-	-	-	-
1992	L00352 CDS	Z19521 CDS	-	6	2577	0.139	669	0.681	630	0.499	-	-	-	-	-	-	-	-	-	-
1993	L34041 CDS	M25558 CDS	-	1	1047	0.032	328	0.414	323	0.389	-	-	331	0.491	-	-	-	-	-	-
1994	J03810 CDS	X15684 CDS	J03145 CDS	1	1569	0.109	426	0.585	407	0.426	-	-	826	0.471	1566	0.026	494	0.174	485	0.150
1995	D16583 CDS	X57437 CDS	M29591 CDS	0	1965	0.072	573	0.475	557	0.402	-	-	325	0.443	1929	0.047	584	0.177	585	0.156
1996	D00017 CDS	M14044 CDS	-	17	1017	0.012	331	0.423	327	0.402	-	-	275	0.368	-	-	-	-	-	-
1997	M36067 CDS	U04674 CDS	-	11	2742	0.095	771	0.534	754	0.445	172	0.417	-	-	-	-	-	-	-	-
1998	M35433 CDS	X58426 CDS	X17366 CDS	3	1494	0.155	374	0.547	349	0.382	-	-	-	-	1476	0.061	435	0.194	432	0.149
1999	M94077 CDS	U09189 CDS	-	0	945	0.198	241	0.689	218	0.519	-	-	-	-	-	-	-	-	-	-
2000	M94054 CDS	M65142 CDS	U11038 CDS	5	1233	0.070	359	0.621	343	0.472	250	0.368	286	0.285	1233	0.022	392	0.204	390	0.192

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