Substitution rate and gene expression pattern in mammals

Genes 2001 to 2100

                                                                        
NbT:      number of tissues where ESTs have been detected (in human). 
LgCDS:    length of the aligned protein coding sequences (CDS).       
Ka:       non-synonymous substitution rate.                           
LgS:      number of synonymous sites.                                 
Ks:       synonymous substitution rate.                               
LgSnd:    number of synonymous sites after having removed doublet substitutions.                                                               
Ks_nd:    synonymous substitution rate without doublet substitutions. 
Lg5'UTR:  length of the aligned 5'UTRs (*).                    
K 5'UTR:  substitution rate within 5'UTRs (*).                 
Lg3'UTR:  length of the aligned 3'UTRs (*).                    
K 3'UTR:  substitution rate within 3'UTRs (*).                 
                                                                             
   (*) UTR data from Makalowski and Boguski (1998) Proc. Natl. Acad. Sci. USA 95:9407-9412                                        
   (**) When both rat and mouse orthologs are available, human/rodent substitution rates are calculated using mouse.

					Human / Rodent (**)										Mouse / Rat
	Human acc. num.	Mouse acc. num.	Rat acc. num.	NbT	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd	Lg5'UTR	K 5'UTR	Lg3'UTR	K 3'UTR	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd
2001	J03571 CDS	L42198 CDS	J03960 CDS	7	2022	0.038	628	0.530	617	0.491	-	-	391	0.703	2010	0.017	649	0.208	643	0.179
2002	J03490 CDS	U73445 CDS	-	8	1527	0.027	481	0.347	478	0.325	-	-	-	-	-	-	-	-	-	-
2003	M36951 CDS	Z67745 CDS	M33114 CDS	12	927	0.001	308	0.249	308	0.249	-	-	745	0.107	927	0.000	309	0.082	309	0.082
2004	M54992 CDS	S40777 CDS	-	2	1035	0.331	194	0.611	174	0.270	-	-	361	0.462	-	-	-	-	-	-
2005	L20688 CDS	L07918 CDS	-	10	600	0.064	175	0.648	171	0.610	-	-	-	-	-	-	-	-	-	-
2006	M22638 CDS	X55055 CDS	-	1	795	0.143	205	0.569	193	0.360	214	0.582	221	0.432	-	-	-	-	-	-
2007	L11016 CDS	U16984 CDS	-	0	720	0.145	185	0.380	177	0.276	-	-	-	-	-	-	-	-	-	-
2008	M16985 CDS	X64070 CDS	-	10	831	0.045	254	0.464	247	0.378	164	0.476	1242	0.391	-	-	-	-	-	-
2009	J03925 CDS	X07640 CDS	-	1	3456	0.159	859	0.572	795	0.390	-	-	240	0.683	-	-	-	-	-	-
2010	L13210 CDS	X67809 CDS	-	13	1728	0.207	399	0.598	365	0.382	158	0.701	258	0.690	-	-	-	-	-	-
2011	L06895 CDS	L38926 CDS	-	0	657	0.070	194	0.624	182	0.515	-	-	156	0.367	-	-	-	-	-	-
2012	M69043 CDS	U36277 CDS	X63594 CDS	11	942	0.044	287	0.349	283	0.306	-	-	479	0.406	942	0.007	309	0.139	309	0.136
2013	M93221 CDS	Z11974 CDS	-	5	4365	0.104	1193	0.633	1133	0.493	-	-	-	-	-	-	-	-	-	-
2014	M68857 CDS	-	D00688 CDS	7	1575	0.076	458	0.572	436	0.467	-	-	-	-	-	-	-	-	-	-
2015	M69135 CDS	-	M23601 CDS	3	1560	0.063	459	0.448	443	0.407	-	-	745	0.496	-	-	-	-	-	-
2016	L35253 CDS	U10871 CDS	-	1	1080	0.003	358	0.477	354	0.450	288	0.811	160	0.196	-	-	-	-	-	-
2017	M68956 CDS	M60474 CDS	-	8	924	0.200	217	0.706	211	0.514	381	0.047	1224	0.091	-	-	-	-	-	-
2018	M13150 CDS	X67735 CDS	-	0	972	0.059	287	0.683	274	0.541	170	0.597	-	-	-	-	-	-	-	-
2019	L37385 CDS	L31958 CDS	-	7	183	-	-	-	-	-	506	0.256	520	0.258	-	-	-	-	-	-
2020	L27080 CDS	L22527 CDS	L27081 CDS	0	975	0.113	259	0.635	255	0.509	240	0.645	-	-	975	0.031	306	0.269	299	0.243
2021	M91432 CDS	U07159 CDS	J02791 CDS	7	1263	0.063	370	0.822	357	0.720	-	-	547	0.507	1263	0.020	403	0.329	401	0.317
2022	M73720 CDS	J05118 CDS	U67914 CDS	3	1251	0.107	340	0.550	317	0.402	-	-	176	0.489	1236	0.032	382	0.168	379	0.149
2023	M94345 CDS	X54511 CDS	-	8	1044	0.066	310	0.413	306	0.338	-	-	-	-	-	-	-	-	-	-
2024	L31801 CDS	X82438 CDS	X86216 CDS	8	1476	0.078	429	0.567	418	0.486	-	-	967	0.281	1473	0.025	466	0.228	463	0.218
2025	J04031 CDS	-	J05519 CDS	11	2805	0.034	873	0.487	852	0.435	-	-	216	0.214	-	-	-	-	-	-
2026	M14758 CDS	M30697 CDS	-	6	3828	0.076	1113	0.456	1078	0.374	157	0.556	364	0.368	-	-	-	-	-	-
2027	M23234 CDS	J03398 CDS	L15079 CDS	6	3822	0.049	1160	0.487	1130	0.425	-	-	-	-	3822	0.014	1239	0.203	1236	0.198
2028	L10400 CDS	L10401 CDS	-	11	516	0.032	161	0.305	159	0.259	-	-	286	0.165	-	-	-	-	-	-
2029	L37298 CDS	-	M94064 CDS	4	1452	0.023	464	0.385	456	0.349	-	-	-	-	-	-	-	-	-	-
2030	L16794 CDS	S68893 CDS	AJ005425 CDS	2	1542	0.015	498	0.285	497	0.273	240	0.278	-	-	1521	0.004	503	0.058	503	0.058
2031	M38059 CDS	-	M33528 CDS	0	738	0.067	216	0.486	213	0.478	-	-	367	0.423	-	-	-	-	-	-
2032	D13969 CDS	D90085 CDS	-	7	1026	0.026	328	0.439	324	0.428	-	-	-	-	-	-	-	-	-	-
2033	L23134 CDS	L76741 CDS	-	0	762	0.223	178	0.674	161	0.429	-	-	-	-	-	-	-	-	-	-
2034	M88468 CDS	-	M29472 CDS	6	1185	0.107	323	0.491	317	0.422	-	-	416	0.595	-	-	-	-	-	-
2035	L76627 CDS	-	M61099 CDS	1	3573	0.027	1132	0.467	1121	0.438	235	0.364	233	0.402	-	-	-	-	-	-
2036	M55270 CDS	S77350 CDS	-	11	309	-	-	-	-	-	-	-	249	0.485	-	-	-	-	-	-
2037	D28538 CDS	-	D10891 CDS	4	3513	0.026	1119	0.547	1100	0.484	-	-	-	-	-	-	-	-	-	-
2038	K01144 CDS	-	X13044 CDS	14	645	0.149	161	0.421	150	0.286	-	-	372	0.553	-	-	-	-	-	-
2039	M59829 CDS	L27086 CDS	X77209 CDS	3	1923	0.031	605	0.783	583	0.680	-	-	357	0.399	1923	0.006	634	0.232	631	0.226
2040	K03474 CDS	X63240 CDS	S98336 CDS	1	1665	0.189	400	0.693	364	0.437	-	-	-	-	1659	0.064	494	0.218	485	0.176
2041	D10604 CDS	M34094 CDS	-	7	420	-	-	-	-	-	351	0.675	257	0.296	-	-	-	-	-	-
2042	L05624 CDS	L02526 CDS	-	4	1179	0.005	389	0.439	381	0.419	-	-	230	0.163	-	-	-	-	-	-
2043	M24247 CDS	-	X16325 CDS	3	585	0.025	186	0.469	183	0.438	-	-	224	0.471	-	-	-	-	-	-
2044	M21812 CDS	U77943 CDS	X00975 CDS	7	507	0.017	163	0.537	162	0.516	-	-	-	-	507	0.002	168	0.153	168	0.153
2045	M69066 CDS	S47577 CDS	AF004811 CDS	3	1731	0.006	569	0.343	566	0.334	-	-	-	-	1731	0.004	572	0.147	570	0.144
2046	D49441 CDS	D86370 CDS	-	4	1863	0.293	365	0.663	322	0.380	-	-	-	-	-	-	-	-	-	-
2047	J03528 CDS	U04710 CDS	U59809 CDS	6	7431	0.113	2014	0.708	1900	0.530	-	-	-	-	7419	0.034	2302	0.187	2288	0.173
2048	L06155 CDS	X74983 CDS	X70667 CDS	0	969	0.067	285	0.427	277	0.373	-	-	-	-	969	0.035	303	0.226	299	0.190
2049	U73737 CDS	U42190 CDS	-	4	4062	0.084	1162	0.490	1118	0.390	-	-	-	-	-	-	-	-	-	-
2050	L47582 CDS	U21011 CDS	X93591 CDS	6	2802	0.042	863	0.514	845	0.450	-	-	215	0.693	2799	0.031	876	0.265	868	0.241
2051	D11094 CDS	-	D50694 CDS	11	1299	0.001	432	0.561	420	0.525	-	-	-	-	-	-	-	-	-	-
2052	D43638 CDS	D32007 CDS	-	4	1731	0.003	573	0.326	571	0.321	-	-	-	-	-	-	-	-	-	-
2053	M37510 CDS	X51941 CDS	-	8	2244	0.045	683	0.475	665	0.405	-	-	465	0.682	-	-	-	-	-	-
2054	M19720 CDS	X13945 CDS	-	2	1092	0.056	328	0.453	323	0.402	-	-	-	-	-	-	-	-	-	-
2055	M94547 CDS	S70785 CDS	-	2	489	0.022	155	0.502	150	0.431	-	-	-	-	-	-	-	-	-	-
2056	M28713 CDS	-	D00636 CDS	2	903	0.074	260	0.496	248	0.373	-	-	-	-	-	-	-	-	-	-
2057	D13789 CDS	L39373 CDS	D10852 CDS	2	1593	0.043	489	0.604	469	0.501	-	-	-	-	1593	0.007	523	0.135	526	0.129
2058	D49728 CDS	X16995 CDS	-	5	1794	0.046	548	0.512	534	0.452	-	-	554	0.184	-	-	-	-	-	-
2059	M86667 CDS	D12618 CDS	-	12	1173	0.008	384	0.284	381	0.276	-	-	-	-	-	-	-	-	-	-
2060	L13258 CDS	U22465 CDS	-	0	1911	0.065	569	0.508	548	0.420	-	-	386	0.583	-	-	-	-	-	-
2061	D17716 CDS	-	L14284 CDS	1	2220	0.015	719	0.546	709	0.509	-	-	-	-	-	-	-	-	-	-
2062	M21186 CDS	M31775 CDS	U18729 CDS	12	570	0.064	167	0.820	164	0.684	-	-	-	-	570	0.014	184	0.229	184	0.224
2063	L34035 CDS	J02652 CDS	M26594 CDS	4	1716	0.040	530	0.341	519	0.302	-	-	-	-	1716	0.028	543	0.240	534	0.212
2064	M95971 CDS	M55669 CDS	M83746 CDS	6	1911	0.016	616	0.461	611	0.433	-	-	217	0.282	1911	0.003	632	0.188	632	0.188
2065	M60284 CDS	X62933 CDS	M31838 CDS	1	1152	0.082	327	0.511	318	0.439	-	-	-	-	1152	0.021	366	0.188	364	0.170
2066	M89914 CDS	L10370 CDS	-	4	8469	0.009	2779	0.361	2748	0.343	-	-	-	-	-	-	-	-	-	-
2067	M76541 CDS	L13968 CDS	-	11	1236	0.005	408	0.187	408	0.182	-	-	857	0.032	-	-	-	-	-	-
2068	M83667 CDS	X61800 CDS	M65149 CDS	8	804	0.085	227	0.446	220	0.321	-	-	330	0.229	804	0.023	256	0.206	253	0.191
2069	M58603 CDS	M57999 CDS	L26267 CDS	6	2892	0.079	839	0.544	808	0.453	285	0.541	315	0.367	1545	0.035	481	0.232	480	0.206
2070	M21062 CDS	V00836 CDS	M36589 CDS	2	723	0.090	204	0.447	198	0.336	163	0.106	170	0.141	720	0.020	230	0.126	235	0.120
2071	M14764 CDS	-	X05137 CDS	0	1272	0.041	392	0.530	386	0.504	-	-	1790	0.403	-	-	-	-	-	-
2072	M89473 CDS	X87823 CDS	J05189 CDS	0	1155	0.053	347	0.559	335	0.417	-	-	-	-	1155	0.017	372	0.197	372	0.180
2073	L19185 CDS	U20611 CDS	U06099 CDS	17	594	0.043	181	0.561	177	0.479	-	-	230	0.496	594	0.011	193	0.153	193	0.153
2074	K03515 CDS	M14220 CDS	-	12	1674	0.062	495	0.493	484	0.442	-	-	253	0.491	-	-	-	-	-	-
2075	M73482 CDS	-	U37058 CDS	2	1170	0.059	347	0.564	334	0.476	-	-	-	-	-	-	-	-	-	-
2076	L76224 CDS	D10694 CDS	M91563 CDS	2	3678	0.058	1098	0.474	1052	0.384	-	-	-	-	3672	0.014	1188	0.161	1196	0.151
2077	D83032 CDS	D83033 CDS	-	9	5754	0.132	1491	0.294	1454	0.230	-	-	-	-	-	-	-	-	-	-
2078	M15789 CDS	-	M15793 CDS	3	291	-	-	-	-	-	-	-	169	0.252	-	-	-	-	-	-
2079	L07615 CDS	D63818 CDS	Z11504 CDS	3	1146	0.032	358	0.721	340	0.624	-	-	178	0.422	1146	0.010	375	0.210	375	0.210
2080	M81600 CDS	M36660 CDS	-	8	822	0.079	234	0.544	226	0.422	-	-	579	0.532	-	-	-	-	-	-
2081	L32185 CDS	L13732 CDS	-	0	1641	0.073	479	0.583	461	0.505	-	-	294	0.769	-	-	-	-	-	-
2082	L37347 CDS	L33415 CDS	-	3	1512	0.066	454	0.459	445	0.398	-	-	-	-	-	-	-	-	-	-
2083	M37763 CDS	X53257 CDS	M33968 CDS	0	771	0.022	246	0.460	246	0.452	-	-	-	-	771	0.004	255	0.113	256	0.112
2084	L21893 CDS	AB003303 CDS	M77479 CDS	2	1047	0.140	269	0.517	250	0.371	-	-	339	0.730	1047	0.042	321	0.200	330	0.178
2085	L39793 CDS	D45836 CDS	L38644 CDS	7	2628	0.005	867	0.349	856	0.330	-	-	261	0.064	2625	0.003	870	0.173	866	0.168
2086	M60858 CDS	X07699 CDS	-	15	2088	0.084	586	0.418	571	0.350	-	-	-	-	-	-	-	-	-	-
2087	M96954 CDS	U55861 CDS	-	10	1125	0.005	371	0.242	372	0.232	-	-	-	-	-	-	-	-	-	-
2088	M26697 CDS	M33212 CDS	-	18	873	0.030	273	0.329	271	0.311	-	-	307	0.079	-	-	-	-	-	-
2089	L01639 CDS	U65580 CDS	U90610 CDS	9	1056	0.050	321	0.542	312	0.473	-	-	-	-	1035	0.011	336	0.252	340	0.244
2090	M29927 CDS	X64837 CDS	-	10	1317	0.047	399	0.632	384	0.545	-	-	560	0.455	-	-	-	-	-	-
2091	L34774 CDS	-	M88710 CDS	1	1035	0.009	339	0.309	336	0.296	-	-	373	0.286	-	-	-	-	-	-
2092	L26494 CDS	X54628 CDS	-	0	1344	0.006	443	0.238	442	0.230	-	-	774	0.149	-	-	-	-	-	-
2093	L20433 CDS	S69350 CDS	-	0	1260	0.006	415	0.169	416	0.163	-	-	-	-	-	-	-	-	-	-
2094	M31303 CDS	X94915 CDS	-	15	447	-	-	-	-	-	-	-	435	0.118	-	-	-	-	-	-
2095	M97016 CDS	M97017 CDS	-	2	1197	0.077	343	0.411	333	0.336	-	-	-	-	-	-	-	-	-	-
2096	L29301 CDS	U19380 CDS	L22455 CDS	0	1194	0.040	372	0.612	363	0.534	182	0.336	688	0.353	1194	0.012	388	0.215	387	0.204
2097	D38551 CDS	D49429 CDS	-	9	1890	0.011	615	0.600	603	0.552	-	-	-	-	-	-	-	-	-	-
2098	D14662 CDS	Y12883 CDS	-	17	672	0.066	201	0.365	194	0.289	-	-	-	-	-	-	-	-	-	-
2099	D14696 CDS	U34259 CDS	-	16	699	0.014	226	0.302	224	0.277	-	-	-	-	-	-	-	-	-	-
2100	D21063 CDS	AF004105 CDS	-	9	2712	0.029	859	0.584	843	0.538	-	-	-	-	-	-	-	-	-	-

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