Substitution rate and gene expression pattern in mammals

Genes 2101 to 2200

                                                                        
NbT:      number of tissues where ESTs have been detected (in human). 
LgCDS:    length of the aligned protein coding sequences (CDS).       
Ka:       non-synonymous substitution rate.                           
LgS:      number of synonymous sites.                                 
Ks:       synonymous substitution rate.                               
LgSnd:    number of synonymous sites after having removed doublet substitutions.                                                               
Ks_nd:    synonymous substitution rate without doublet substitutions. 
Lg5'UTR:  length of the aligned 5'UTRs (*).                    
K 5'UTR:  substitution rate within 5'UTRs (*).                 
Lg3'UTR:  length of the aligned 3'UTRs (*).                    
K 3'UTR:  substitution rate within 3'UTRs (*).                 
                                                                             
   (*) UTR data from Makalowski and Boguski (1998) Proc. Natl. Acad. Sci. USA 95:9407-9412                                        
   (**) When both rat and mouse orthologs are available, human/rodent substitution rates are calculated using mouse.

					Human / Rodent (**)										Mouse / Rat
	Human acc. num.	Mouse acc. num.	Rat acc. num.	NbT	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd	Lg5'UTR	K 5'UTR	Lg3'UTR	K 3'UTR	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd
2101	D21163 CDS	U97079 CDS	-	14	2913	0.004	964	0.390	959	0.378	-	-	-	-	-	-	-	-	-	-
2102	D21260 CDS	-	J03583 CDS	12	5025	0.001	1671	0.428	1659	0.418	-	-	884	0.103	-	-	-	-	-	-
2103	D30756 CDS	U73039 CDS	-	9	2871	0.084	819	0.342	802	0.271	-	-	-	-	-	-	-	-	-	-
2104	D25538 CDS	U12919 CDS	-	3	3237	0.105	902	0.553	862	0.424	293	0.636	1142	0.503	-	-	-	-	-	-
2105	D13665 CDS	D13664 CDS	-	5	2337	0.051	700	0.596	669	0.489	-	-	-	-	-	-	-	-	-	-
2106	D14813 CDS	X51834 CDS	-	10	882	0.237	197	0.813	179	0.418	-	-	-	-	-	-	-	-	-	-
2107	D00230 CDS	X07092 CDS	-	1	1062	0.041	326	0.380	322	0.353	-	-	-	-	-	-	-	-	-	-
2108	L14812 CDS	U27177 CDS	-	1	3189	0.050	963	0.478	946	0.421	-	-	-	-	-	-	-	-	-	-
2109	D55716 CDS	D26091 CDS	-	12	2157	0.038	668	0.534	655	0.484	-	-	-	-	-	-	-	-	-	-
2110	L34068 CDS	L08115 CDS	X76489 CDS	6	678	0.064	202	0.565	196	0.438	-	-	-	-	678	0.032	214	0.166	213	0.163
2111	D50063 CDS	M64641 CDS	-	13	963	0.021	308	0.509	305	0.468	-	-	-	-	-	-	-	-	-	-
2112	M63871 CDS	M64863 CDS	X69816 CDS	2	1521	0.231	338	0.601	306	0.406	-	-	-	-	1521	0.096	422	0.208	415	0.175
2113	L36151 CDS	-	D83538 CDS	9	2562	0.009	838	0.498	830	0.479	-	-	-	-	-	-	-	-	-	-
2114	M88108 CDS	U17046 CDS	-	14	1329	0.027	417	0.349	409	0.307	-	-	320	0.048	-	-	-	-	-	-
2115	J02923 CDS	D37837 CDS	-	3	1881	0.021	604	0.475	587	0.429	-	-	-	-	-	-	-	-	-	-
2116	M62399 CDS	M61909 CDS	-	3	1641	0.060	487	0.427	476	0.380	-	-	-	-	-	-	-	-	-	-
2117	M60725 CDS	-	M57428 CDS	3	1506	0.001	501	0.144	499	0.140	-	-	-	-	-	-	-	-	-	-
2118	D17516 CDS	D82935 CDS	-	2	1404	0.041	433	0.445	424	0.408	-	-	-	-	-	-	-	-	-	-
2119	M80482 CDS	D50060 CDS	L31894 CDS	6	2793	0.043	857	0.530	839	0.482	-	-	1270	0.346	2793	0.015	905	0.202	904	0.187
2120	D63391 CDS	U57746 CDS	-	10	693	0.022	222	0.488	217	0.428	-	-	-	-	-	-	-	-	-	-
2121	J03764 CDS	M33960 CDS	J05206 CDS	4	1206	0.119	316	0.618	302	0.456	-	-	1470	0.521	1206	0.052	358	0.141	354	0.116
2122	L15533 CDS	D63360 CDS	L07127 CDS	2	525	-	-	-	-	-	-	-	226	0.805	525	0.057	157	0.335	156	0.266
2123	M81057 CDS	-	M23959 CDS	2	1242	0.161	314	0.579	291	0.396	-	-	-	-	-	-	-	-	-	-
2124	M93650 CDS	X63963 CDS	U69644 CDS	3	1266	0.000	422	0.251	420	0.243	-	-	-	-	1266	0.002	421	0.139	421	0.140
2125	L19606 CDS	X99592 CDS	X94246 CDS	1	1350	0.010	441	0.344	438	0.326	-	-	-	-	1350	0.022	433	0.122	435	0.102
2126	M95623 CDS	-	Y12006 CDS	8	1083	0.053	327	0.434	320	0.373	-	-	-	-	-	-	-	-	-	-
2127	M95623 CDS	M28666 CDS	X06827 CDS	7	1032	0.055	309	0.434	297	0.356	-	-	-	-	1032	0.019	331	0.111	328	0.104
2128	M57736 CDS	J02700 CDS	-	5	2613	0.118	701	0.570	661	0.419	-	-	-	-	-	-	-	-	-	-
2129	D12981 CDS	U88588 CDS	-	5	1329	0.063	394	0.528	383	0.432	-	-	-	-	-	-	-	-	-	-
2130	M68516 CDS	U67878 CDS	-	3	1212	0.235	260	0.666	239	0.378	-	-	-	-	-	-	-	-	-	-
2131	L07860 CDS	X60304 CDS	-	8	2022	0.050	610	0.490	600	0.439	-	-	-	-	-	-	-	-	-	-
2132	J04718 CDS	X57800 CDS	-	11	783	0.015	253	0.546	250	0.516	-	-	-	-	-	-	-	-	-	-
2133	L33799 CDS	X57337 CDS	U94710 CDS	10	1134	0.108	311	0.612	296	0.456	-	-	-	-	1134	0.027	362	0.176	380	0.166
2134	L27440 CDS	X67914 CDS	-	0	858	0.297	170	0.626	153	0.309	-	-	-	-	-	-	-	-	-	-
2135	M21616 CDS	X04367 CDS	-	4	3294	0.078	944	0.535	906	0.423	-	-	1638	0.406	-	-	-	-	-	-
2136	D90084 CDS	M76727 CDS	Z12158 CDS	16	1170	0.010	383	0.565	377	0.544	-	-	195	0.581	1170	0.002	388	0.207	386	0.202
2137	L42450 CDS	-	L22294 CDS	2	1302	0.048	402	0.469	389	0.395	-	-	-	-	-	-	-	-	-	-
2138	L42451 CDS	-	U10357 CDS	8	1221	0.015	395	0.361	390	0.335	-	-	-	-	-	-	-	-	-	-
2139	M98538 CDS	X89222 CDS	M94134 CDS	13	567	-	-	-	-	-	-	-	-	-	567	0.059	167	0.202	163	0.126
2140	L34657 CDS	L06039 CDS	U77697 CDS	7	2181	0.245	463	0.675	422	0.431	-	-	193	0.318	1026	0.091	288	0.256	278	0.196
2141	M64925 CDS	U38196 CDS	-	8	1398	0.040	433	0.417	428	0.380	-	-	-	-	-	-	-	-	-	-
2142	M23077 CDS	-	M25993 CDS	1	1164	0.162	288	0.469	272	0.326	-	-	-	-	-	-	-	-	-	-
2143	J04605 CDS	S82620 CDS	-	8	1479	0.076	427	0.600	415	0.466	-	-	-	-	-	-	-	-	-	-
2144	M86852 CDS	L27842 CDS	X57988 CDS	5	915	0.074	266	0.578	257	0.504	340	0.428	322	0.344	915	0.022	293	0.091	290	0.074
2145	L28175 CDS	D13458 CDS	D28860 CDS	2	1455	0.060	430	0.429	415	0.356	177	0.563	-	-	1455	0.010	474	0.169	477	0.162
2146	L24470 CDS	D17433 CDS	U47287 CDS	0	1077	0.059	319	0.635	304	0.516	258	0.354	827	0.577	1077	0.016	347	0.338	349	0.332
2147	J04173 CDS	-	M76591 CDS	12	762	0.016	247	0.395	243	0.369	-	-	851	0.382	-	-	-	-	-	-
2148	M55674 CDS	AF029843 CDS	Z17319 CDS	7	759	0.033	237	0.523	236	0.501	-	-	-	-	759	0.013	247	0.183	245	0.176
2149	L76465 CDS	U44389 CDS	U44750 CDS	3	798	0.070	230	0.431	220	0.339	-	-	-	-	798	0.043	244	0.159	242	0.136
2150	M31822 CDS	M34141 CDS	U18060 CDS	0	1797	0.060	535	0.539	521	0.472	-	-	743	0.346	1797	0.023	570	0.179	569	0.159
2151	L00160 CDS	M15668 CDS	M31788 CDS	15	1251	0.012	407	0.297	403	0.271	-	-	378	0.261	1251	0.003	414	0.152	414	0.152
2152	M83088 CDS	-	L11694 CDS	6	1686	0.019	542	0.443	538	0.421	-	-	-	-	-	-	-	-	-	-
2153	D84657 CDS	AB000777 CDS	-	4	1758	0.020	565	0.478	554	0.431	-	-	-	-	-	-	-	-	-	-
2154	M73704 CDS	U96726 CDS	-	5	810	0.006	267	0.306	266	0.304	192	0.176	628	0.245	-	-	-	-	-	-
2155	M31606 CDS	-	M73808 CDS	6	1218	0.042	376	0.340	373	0.313	-	-	249	0.446	-	-	-	-	-	-
2156	M63603 CDS	S46792 CDS	-	4	156	-	-	-	-	-	210	0.267	572	0.433	-	-	-	-	-	-
2157	L12760 CDS	AF009605 CDS	K03248 CDS	2	1866	0.047	565	0.667	545	0.600	-	-	-	-	1866	0.012	607	0.254	605	0.244
2158	L26232 CDS	U37226 CDS	-	12	1479	0.109	407	0.532	388	0.471	-	-	-	-	-	-	-	-	-	-
2159	D45248 CDS	U60329 CDS	D45250 CDS	14	717	0.029	223	0.302	219	0.252	-	-	-	-	714	0.013	231	0.141	231	0.141
2160	M86400 CDS	U79231 CDS	U37252 CDS	13	735	0.002	244	0.319	240	0.286	-	-	862	0.113	735	0.002	244	0.102	244	0.102
2161	D28791 CDS	D31863 CDS	-	0	1452	0.070	424	0.333	417	0.279	-	-	1978	0.353	-	-	-	-	-	-
2162	D13435 CDS	D50264 CDS	-	8	657	0.077	192	0.396	181	0.276	-	-	-	-	-	-	-	-	-	-
2163	M27903 CDS	M13945 CDS	X63675 CDS	1	939	0.030	294	0.404	288	0.352	-	-	343	0.505	939	0.030	295	0.158	291	0.117
2164	D30037 CDS	U46934 CDS	-	1	813	0.012	264	0.367	261	0.356	-	-	324	0.333	-	-	-	-	-	-
2165	L33881 CDS	D28577 CDS	-	5	1758	0.010	574	0.469	568	0.441	-	-	174	0.619	-	-	-	-	-	-
2166	M55284 CDS	D90242 CDS	-	5	2046	0.016	662	0.474	652	0.455	-	-	-	-	-	-	-	-	-	-
2167	L07032 CDS	D11091 CDS	-	2	2118	0.028	669	0.622	658	0.587	-	-	512	0.425	-	-	-	-	-	-
2168	L43619 CDS	U70209 CDS	-	11	12834	0.136	3359	0.667	3159	0.495	-	-	-	-	-	-	-	-	-	-
2169	D26181 CDS	-	D26180 CDS	9	2826	0.044	868	0.561	842	0.489	-	-	-	-	-	-	-	-	-	-
2170	M72393 CDS	M72394 CDS	-	0	2244	0.028	708	0.546	689	0.484	-	-	410	0.338	-	-	-	-	-	-
2171	D50810 CDS	-	U32990 CDS	3	2505	0.077	720	0.444	707	0.385	-	-	-	-	-	-	-	-	-	-
2172	M23410 CDS	M90365 CDS	U58858 CDS	4	2232	0.019	720	0.469	715	0.431	-	-	-	-	1860	0.004	615	0.178	614	0.169
2173	M34667 CDS	-	J03806 CDS	8	3870	0.015	1250	0.428	1235	0.411	-	-	445	0.138	-	-	-	-	-	-
2174	D42108 CDS	-	D45920 CDS	3	2991	0.028	944	0.524	931	0.504	-	-	-	-	-	-	-	-	-	-
2175	M34276 CDS	J04766 CDS	-	4	2430	0.129	641	0.729	608	0.546	-	-	-	-	-	-	-	-	-	-
2176	L06419 CDS	-	L25331 CDS	5	2181	0.051	663	0.530	645	0.452	-	-	633	0.509	-	-	-	-	-	-
2177	J03890 CDS	M38314 CDS	-	3	573	0.110	154	0.608	152	0.490	-	-	186	0.428	-	-	-	-	-	-
2178	M22382 CDS	X55023 CDS	U68562 CDS	9	1719	0.013	558	0.378	548	0.358	-	-	446	0.125	1719	0.002	571	0.118	571	0.117
2179	M13953 CDS	L11291 CDS	-	8	867	0.094	242	0.476	230	0.358	-	-	376	0.440	-	-	-	-	-	-
2180	M73547 CDS	U28168 CDS	-	9	555	0.039	169	0.396	166	0.353	-	-	-	-	-	-	-	-	-	-
2181	M73548 CDS	M88127 CDS	D38629 CDS	7	8211	0.055	2459	0.454	2388	0.392	-	-	-	-	8505	0.035	2639	0.269	2606	0.245
2182	L48513 CDS	L48514 CDS	-	8	1062	0.090	302	0.465	289	0.335	-	-	-	-	-	-	-	-	-	-
2183	L48516 CDS	L76193 CDS	-	9	1014	0.122	270	0.447	257	0.344	-	-	-	-	-	-	-	-	-	-
2184	D14497 CDS	D13759 CDS	M94454 CDS	5	1401	0.035	435	0.575	426	0.537	186	0.697	966	0.293	1401	0.017	450	0.221	446	0.213
2185	M32402 CDS	M95545 CDS	-	1	1107	0.105	304	0.676	292	0.536	-	-	998	0.417	-	-	-	-	-	-
2186	M60484 CDS	Z67746 CDS	X14087 CDS	10	927	0.000	309	0.369	309	0.369	-	-	556	0.213	927	0.000	309	0.134	309	0.134
2187	L07592 CDS	U10375 CDS	-	1	1320	0.043	404	0.417	399	0.376	219	0.329	442	0.604	-	-	-	-	-	-
2188	M17885 CDS	X15267 CDS	Z29530 CDS	19	951	0.012	309	0.397	307	0.378	-	-	-	-	951	0.009	311	0.298	308	0.273
2189	M82962 CDS	M74897 CDS	S43408 CDS	0	2232	0.154	563	0.585	520	0.406	-	-	164	0.689	2226	0.069	649	0.183	649	0.156
2190	M98529 CDS	M98530 CDS	-	9	555	0.013	180	0.268	178	0.258	-	-	-	-	-	-	-	-	-	-
2191	M13143 CDS	M58588 CDS	-	1	1914	0.144	486	0.605	449	0.452	-	-	236	0.539	-	-	-	-	-	-
2192	M86528 CDS	-	M86742 CDS	1	627	0.050	189	0.616	180	0.534	-	-	-	-	-	-	-	-	-	-
2193	M22960 CDS	J05261 CDS	-	14	1422	0.069	416	0.476	403	0.396	-	-	360	0.355	-	-	-	-	-	-
2194	L42809 CDS	-	L34262 CDS	5	918	0.087	262	0.562	252	0.430	-	-	-	-	-	-	-	-	-	-
2195	M11228 CDS	D10445 CDS	-	2	1380	0.203	316	0.566	297	0.345	-	-	-	-	-	-	-	-	-	-
2196	L16499 CDS	Z21524 CDS	-	2	810	0.037	249	0.427	246	0.379	-	-	-	-	-	-	-	-	-	-
2197	M34181 CDS	J02626 CDS	-	3	1053	0.016	340	0.634	334	0.598	-	-	-	-	-	-	-	-	-	-
2198	J00299 CDS	X02892 CDS	J00769 CDS	6	675	-	-	-	-	-	-	-	-	-	675	0.078	190	0.184	189	0.157
2199	M22806 CDS	X06453 CDS	-	10	1521	0.033	476	0.592	469	0.535	-	-	865	0.393	-	-	-	-	-	-
2200	J03191 CDS	X14425 CDS	-	15	420	-	-	-	-	-	-	-	240	0.123	-	-	-	-	-	-

If you have problems or comments...

Back to Query home page