Substitution rate and gene expression pattern in mammals

Genes 2201 to 2300

                                                                        
NbT:      number of tissues where ESTs have been detected (in human). 
LgCDS:    length of the aligned protein coding sequences (CDS).       
Ka:       non-synonymous substitution rate.                           
LgS:      number of synonymous sites.                                 
Ks:       synonymous substitution rate.                               
LgSnd:    number of synonymous sites after having removed doublet substitutions.                                                               
Ks_nd:    synonymous substitution rate without doublet substitutions. 
Lg5'UTR:  length of the aligned 5'UTRs (*).                    
K 5'UTR:  substitution rate within 5'UTRs (*).                 
Lg3'UTR:  length of the aligned 3'UTRs (*).                    
K 3'UTR:  substitution rate within 3'UTRs (*).                 
                                                                             
   (*) UTR data from Makalowski and Boguski (1998) Proc. Natl. Acad. Sci. USA 95:9407-9412                                        
   (**) When both rat and mouse orthologs are available, human/rodent substitution rates are calculated using mouse.

					Human / Rodent (**)										Mouse / Rat
	Human acc. num.	Mouse acc. num.	Rat acc. num.	NbT	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd	Lg5'UTR	K 5'UTR	Lg3'UTR	K 3'UTR	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd
2201	M20496 CDS	M20495 CDS	Y00697 CDS	11	999	0.174	239	0.836	227	0.641	-	-	-	-	999	0.030	312	0.190	309	0.165
2202	M64929 CDS	-	M83298 CDS	7	1341	0.001	446	0.359	444	0.350	-	-	513	0.218	-	-	-	-	-	-
2203	M64930 CDS	-	D38260 CDS	3	1329	0.002	441	0.195	439	0.184	-	-	-	-	-	-	-	-	-	-
2204	M31452 CDS	M17122 CDS	Z50051 CDS	3	1275	0.338	230	0.524	208	0.268	-	-	-	-	1278	0.237	277	0.271	266	0.131
2205	D00860 CDS	-	M29392 CDS	5	954	0.000	318	0.351	314	0.335	-	-	897	0.301	-	-	-	-	-	-
2206	M57853 CDS	Z25469 CDS	-	5	2025	0.122	538	0.509	510	0.387	-	-	861	0.453	-	-	-	-	-	-
2207	L76528 CDS	L42177 CDS	D82578 CDS	2	1401	0.037	433	0.517	424	0.450	-	-	-	-	1398	0.017	450	0.189	448	0.183
2208	D00759 CDS	-	D90265 CDS	7	789	0.010	257	0.411	251	0.386	-	-	293	0.240	-	-	-	-	-	-
2209	D00760 CDS	X70303 CDS	J02897 CDS	10	702	0.005	232	0.391	230	0.376	-	-	-	-	702	0.002	233	0.225	232	0.217
2210	D00761 CDS	X80686 CDS	-	14	720	0.042	224	0.630	216	0.515	-	-	-	-	-	-	-	-	-	-
2211	D00762 CDS	AF055983 CDS	M58593 CDS	15	765	0.006	252	0.266	251	0.262	-	-	-	-	765	0.004	253	0.127	253	0.127
2212	D00763 CDS	-	X53304 CDS	8	783	0.004	259	0.412	257	0.407	-	-	216	0.314	-	-	-	-	-	-
2213	D26598 CDS	-	D21800 CDS	12	615	0.008	201	0.405	200	0.400	-	-	-	-	-	-	-	-	-	-
2214	D26599 CDS	-	D21799 CDS	11	603	0.019	193	0.320	191	0.305	-	-	-	-	-	-	-	-	-	-
2215	D26600 CDS	U65636 CDS	L17127 CDS	17	792	0.037	247	0.472	239	0.409	-	-	-	-	696	0.029	221	0.249	220	0.228
2216	M99487 CDS	AF026380 CDS	U75973 CDS	3	2250	0.085	637	0.515	619	0.425	-	-	-	-	2250	0.035	692	0.189	685	0.166
2217	L41680 CDS	X86000 CDS	U90215 CDS	0	1077	0.012	351	0.338	343	0.303	-	-	-	-	1059	0.007	348	0.208	348	0.205
2218	D29012 CDS	U13394 CDS	D10754 CDS	10	606	0.026	192	0.409	189	0.372	-	-	-	-	606	0.014	196	0.232	193	0.208
2219	M88177 CDS	D50872 CDS	U04740 CDS	0	1023	0.119	276	0.551	261	0.413	-	-	-	-	1023	0.042	311	0.229	302	0.186
2220	D38145 CDS	AB001607 CDS	U53855 CDS	1	1500	0.090	420	0.612	401	0.476	-	-	-	-	1500	0.024	475	0.174	476	0.162
2221	J00301 CDS	-	K01268 CDS	0	345	-	-	-	-	-	-	-	232	0.366	-	-	-	-	-	-
2222	M17183 CDS	M60057 CDS	M34112 CDS	3	525	0.083	152	0.581	148	0.496	-	-	455	0.115	519	0.015	168	0.116	169	0.113
2223	M64174 CDS	S63728 CDS	-	4	3411	0.029	1074	0.440	1057	0.395	-	-	-	-	-	-	-	-	-	-
2224	L07527 CDS	D84372 CDS	U05963 CDS	1	1779	0.004	589	0.702	567	0.621	-	-	329	0.336	1779	0.003	589	0.188	593	0.186
2225	M25393 CDS	M81477 CDS	X58828 CDS	8	1146	0.057	345	0.442	335	0.357	-	-	-	-	1089	0.019	351	0.157	351	0.152
2226	M31724 CDS	U24700 CDS	M33962 CDS	3	1287	0.100	361	0.748	351	0.594	-	-	-	-	1293	0.035	403	0.227	401	0.206
2227	L77886 CDS	L10106 CDS	-	4	4317	0.010	1414	0.538	1398	0.519	-	-	-	-	-	-	-	-	-	-
2228	D25328 CDS	-	L25387 CDS	14	2283	0.072	669	0.731	650	0.660	-	-	186	0.595	-	-	-	-	-	-
2229	M93425 CDS	X86781 CDS	-	7	2322	0.098	645	0.455	631	0.358	-	-	-	-	-	-	-	-	-	-
2230	M96684 CDS	U02098 CDS	-	6	963	0.003	319	0.142	320	0.142	-	-	153	0.119	-	-	-	-	-	-
2231	M32598 CDS	-	L10669 CDS	4	2523	0.025	799	0.500	778	0.461	-	-	-	-	-	-	-	-	-	-
2232	L13278 CDS	S70056 CDS	-	4	987	0.110	267	0.805	254	0.605	-	-	744	0.631	-	-	-	-	-	-
2233	M28209 CDS	X15744 CDS	J02998 CDS	13	615	0.000	205	0.182	205	0.182	-	-	-	-	615	0.004	203	0.201	203	0.201
2234	M28213 CDS	X95403 CDS	J02999 CDS	15	636	0.008	208	0.390	208	0.390	-	-	-	-	636	0.004	210	0.092	210	0.092
2235	M28210 CDS	X72966 CDS	X06889 CDS	3	660	0.006	217	0.672	215	0.634	-	-	-	-	660	0.002	219	0.249	219	0.249
2236	M28211 CDS	-	X06890 CDS	4	639	0.017	207	0.771	201	0.733	-	-	-	-	-	-	-	-	-	-
2237	D13988 CDS	L36314 CDS	X74401 CDS	9	1335	0.019	428	0.505	420	0.476	-	-	-	-	1335	0.011	436	0.149	434	0.132
2238	M63167 CDS	M94335 CDS	-	9	1440	0.013	470	0.427	467	0.417	204	0.563	837	0.423	-	-	-	-	-	-
2239	D13804 CDS	D13803 CDS	-	2	1017	0.007	334	0.390	330	0.371	219	0.676	537	0.406	-	-	-	-	-	-
2240	L33262 CDS	U12135 CDS	-	1	1218	0.188	289	0.640	275	0.379	-	-	314	0.668	-	-	-	-	-	-
2241	L02320 CDS	X60672 CDS	-	5	1749	0.010	571	0.499	561	0.456	-	-	-	-	-	-	-	-	-	-
2242	M29474 CDS	M29475 CDS	-	0	3120	0.052	936	0.537	913	0.469	-	-	3160	0.347	-	-	-	-	-	-
2243	D38076 CDS	L25255 CDS	-	12	600	0.030	188	0.501	189	0.493	-	-	-	-	-	-	-	-	-	-
2244	M31469 CDS	L32751 CDS	-	18	648	0.000	216	0.563	214	0.548	-	-	-	-	-	-	-	-	-	-
2245	M22431 CDS	U32358 CDS	-	9	432	-	-	-	-	-	-	-	298	0.580	-	-	-	-	-	-
2246	D78155 CDS	-	D30734 CDS	1	2541	0.059	758	0.411	747	0.358	-	-	-	-	-	-	-	-	-	-
2247	L00043 CDS	M12124 CDS	X68394 CDS	3	567	0.007	186	0.369	184	0.358	-	-	-	-	567	0.010	185	0.178	182	0.162
2248	M14949 CDS	M21019 CDS	-	8	654	0.030	206	0.466	203	0.423	-	-	-	-	-	-	-	-	-	-
2249	M11433 CDS	X60367 CDS	-	11	405	-	-	-	-	-	-	-	208	0.319	-	-	-	-	-	-
2250	L07872 CDS	S63463 CDS	-	10	1500	0.019	481	0.412	475	0.383	-	-	-	-	-	-	-	-	-	-
2251	D17532 CDS	D50494 CDS	-	0	1416	0.012	460	0.223	456	0.206	-	-	-	-	-	-	-	-	-	-
2252	D42073 CDS	D43956 CDS	-	9	975	0.023	312	0.445	305	0.402	-	-	-	-	-	-	-	-	-	-
2253	D79206 CDS	D89572 CDS	M81786 CDS	1	591	0.124	158	0.587	154	0.479	-	-	1713	0.354	579	0.027	184	0.186	187	0.196
2254	M10152 CDS	M32352 CDS	X07033 CDS	1	1203	0.185	283	0.519	260	0.347	-	-	-	-	1203	0.090	335	0.245	332	0.206
2255	J05249 CDS	D00812 CDS	-	10	810	0.069	236	0.579	226	0.473	-	-	558	0.571	-	-	-	-	-	-
2256	L11910 CDS	M26391 CDS	-	3	2763	0.048	838	0.394	824	0.355	-	-	-	-	-	-	-	-	-	-
2257	L37378 CDS	-	L36030 CDS	1	3315	0.056	996	0.339	978	0.280	256	0.328	-	-	-	-	-	-	-	-
2258	M92432 CDS	L41933 CDS	L36029 CDS	0	3309	0.082	943	0.585	897	0.466	-	-	-	-	3309	0.023	1052	0.179	1047	0.164
2259	M57464 CDS	X67812 CDS	-	1	2577	0.085	734	0.537	705	0.456	-	-	-	-	-	-	-	-	-	-
2260	J03407 CDS	L46855 CDS	-	10	1539	0.010	504	0.375	497	0.354	-	-	-	-	-	-	-	-	-	-
2261	L25081 CDS	X80638 CDS	-	14	579	0.002	192	0.361	190	0.349	-	-	-	-	-	-	-	-	-	-
2262	M65066 CDS	M20473 CDS	-	6	1140	0.035	357	0.747	350	0.678	-	-	-	-	-	-	-	-	-	-
2263	L42542 CDS	X80937 CDS	U28830 CDS	3	1944	0.039	600	0.436	595	0.396	-	-	405	0.289	1941	0.024	614	0.196	614	0.181
2264	J03473 CDS	X14206 CDS	U94340 CDS	13	3039	0.043	929	0.529	906	0.460	-	-	-	-	3036	0.028	958	0.270	943	0.231
2265	M65028 CDS	D90151 CDS	AB016536 CDS	5	831	0.069	246	0.599	245	0.427	-	-	-	-	828	0.015	268	0.122	274	0.111
2266	J03824 CDS	U18867 CDS	-	7	795	0.130	206	0.591	191	0.401	-	-	235	0.687	-	-	-	-	-	-
2267	L25899 CDS	-	X78167 CDS	19	612	0.030	195	0.454	193	0.370	-	-	-	-	-	-	-	-	-	-
2268	L11566 CDS	L04128 CDS	-	17	564	0.049	170	0.589	165	0.513	-	-	-	-	-	-	-	-	-	-
2269	M94314 CDS	-	X78443 CDS	18	471	0.000	157	0.494	157	0.494	-	-	-	-	-	-	-	-	-	-
2270	J05448 CDS	D83999 CDS	-	5	825	0.017	265	0.442	263	0.417	-	-	-	-	-	-	-	-	-	-
2271	M58458 CDS	M73436 CDS	X14210 CDS	18	789	0.000	263	0.426	263	0.426	-	-	-	-	789	0.000	263	0.186	263	0.186
2272	L36642 CDS	X79082 CDS	-	2	2994	0.009	977	0.392	969	0.377	-	-	-	-	-	-	-	-	-	-
2273	L36645 CDS	S57168 CDS	-	1	2958	0.008	971	0.457	965	0.444	-	-	-	-	-	-	-	-	-	-
2274	D23660 CDS	-	X82180 CDS	18	1254	0.036	391	0.422	383	0.367	-	-	-	-	-	-	-	-	-	-
2275	L12535 CDS	X63039 CDS	-	12	831	0.025	265	0.595	260	0.535	-	-	-	-	-	-	-	-	-	-
2276	D49394 CDS	Z22772 CDS	U59672 CDS	0	1431	0.083	406	0.567	376	0.430	-	-	-	-	1410	0.031	443	0.183	439	0.154
2277	L07597 CDS	M28489 CDS	-	4	2172	0.009	711	0.379	700	0.351	-	-	737	0.325	-	-	-	-	-	-
2278	D00422 CDS	U57999 CDS	-	12	1578	0.213	355	0.634	333	0.406	-	-	-	-	-	-	-	-	-	-
2279	M20543 CDS	M12347 CDS	J00692 CDS	11	1131	0.000	377	0.455	375	0.439	-	-	-	-	1131	0.000	377	0.098	375	0.092
2280	D49357 CDS	-	X15734 CDS	0	1185	0.024	377	0.446	374	0.418	-	-	553	0.547	-	-	-	-	-	-
2281	D00097 CDS	M29535 CDS	M83177 CDS	2	669	0.219	154	0.707	144	0.486	-	-	158	0.654	666	0.113	179	0.160	179	0.106
2282	M85165 CDS	Z36885 CDS	-	0	1287	0.090	365	0.472	350	0.370	-	-	-	-	-	-	-	-	-	-
2283	L21990 CDS	X83733 CDS	-	2	1389	0.019	446	0.835	440	0.789	-	-	-	-	-	-	-	-	-	-
2284	AD001528 CDS	Y09419 CDS	-	5	1098	0.018	352	0.338	346	0.316	-	-	-	-	-	-	-	-	-	-
2285	M97287 CDS	U05252 CDS	-	9	2289	0.010	748	0.386	737	0.353	-	-	-	-	-	-	-	-	-	-
2286	M26393 CDS	L11163 CDS	J05030 CDS	2	1236	0.058	370	0.472	358	0.410	-	-	511	0.760	1236	0.015	399	0.267	399	0.268
2287	M59964 CDS	X99322 CDS	-	0	819	0.099	225	0.226	219	0.156	206	0.140	366	0.223	-	-	-	-	-	-
2288	M63589 CDS	U01530 CDS	-	0	987	0.033	307	0.413	306	0.374	-	-	3026	0.385	-	-	-	-	-	-
2289	L04236 CDS	-	M26643 CDS	0	5481	0.036	1702	0.396	1672	0.350	-	-	-	-	-	-	-	-	-	-
2290	M85169 CDS	-	U83895 CDS	2	1194	0.008	391	0.537	385	0.498	-	-	-	-	-	-	-	-	-	-
2291	M74719 CDS	U16322 CDS	-	9	1998	0.010	653	0.303	649	0.289	-	-	-	-	-	-	-	-	-	-
2292	M76231 CDS	U78077 CDS	M36410 CDS	1	783	0.175	194	0.485	182	0.298	-	-	-	-	771	0.056	229	0.234	226	0.201
2293	L06237 CDS	X51396 CDS	-	7	7380	0.050	2236	0.548	2188	0.490	-	-	1336	0.201	-	-	-	-	-	-
2294	J05037 CDS	-	X13119 CDS	2	981	0.113	271	0.582	260	0.454	-	-	156	1.129	-	-	-	-	-	-
2295	L05597 CDS	Z14224 CDS	L05596 CDS	0	1098	0.032	345	0.514	340	0.502	267	0.756	-	-	1098	0.018	352	0.228	349	0.216
2296	M93651 CDS	-	S68987 CDS	6	831	0.011	270	0.238	270	0.238	-	-	-	-	-	-	-	-	-	-
2297	M68519 CDS	S48768 CDS	U43092 CDS	2	744	0.193	172	0.563	161	0.397	-	-	-	-	744	0.045	227	0.145	223	0.123
2298	D14889 CDS	D83279 CDS	-	4	711	0.009	233	0.294	231	0.281	-	-	-	-	-	-	-	-	-	-
2299	M25756 CDS	X68837 CDS	X13618 CDS	2	1845	0.098	503	0.589	484	0.479	-	-	-	-	1845	0.023	586	0.182	587	0.173
2300	M95549 CDS	-	U29881 CDS	4	2007	0.050	609	0.619	593	0.534	-	-	217	0.431	-	-	-	-	-	-

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