Substitution rate and gene expression pattern in mammals

Genes 2301 to 2400

                                                                        
NbT:      number of tissues where ESTs have been detected (in human). 
LgCDS:    length of the aligned protein coding sequences (CDS).       
Ka:       non-synonymous substitution rate.                           
LgS:      number of synonymous sites.                                 
Ks:       synonymous substitution rate.                               
LgSnd:    number of synonymous sites after having removed doublet substitutions.                                                               
Ks_nd:    synonymous substitution rate without doublet substitutions. 
Lg5'UTR:  length of the aligned 5'UTRs (*).                    
K 5'UTR:  substitution rate within 5'UTRs (*).                 
Lg3'UTR:  length of the aligned 3'UTRs (*).                    
K 3'UTR:  substitution rate within 3'UTRs (*).                 
                                                                             
   (*) UTR data from Makalowski and Boguski (1998) Proc. Natl. Acad. Sci. USA 95:9407-9412                                        
   (**) When both rat and mouse orthologs are available, human/rodent substitution rates are calculated using mouse.

					Human / Rodent (**)										Mouse / Rat
	Human acc. num.	Mouse acc. num.	Rat acc. num.	NbT	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd	Lg5'UTR	K 5'UTR	Lg3'UTR	K 3'UTR	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd
2301	L29339 CDS	-	D16101 CDS	1	1992	0.067	583	0.572	561	0.484	-	-	421	0.409	-	-	-	-	-	-
2302	M31651 CDS	U85644 CDS	M19993 CDS	3	1206	0.236	265	0.472	240	0.273	-	-	-	-	1206	0.062	358	0.149	354	0.115
2303	L38518 CDS	X76290 CDS	L27340 CDS	1	1308	0.038	405	0.480	395	0.404	-	-	-	-	1308	0.019	420	0.134	418	0.126
2304	M74558 CDS	U36778 CDS	-	2	3774	0.150	944	0.453	907	0.341	-	-	-	-	-	-	-	-	-	-
2305	L02911 CDS	L15436 CDS	L19341 CDS	6	1527	0.008	500	0.422	498	0.409	-	-	379	0.235	1527	0.012	496	0.184	496	0.184
2306	M14676 CDS	-	U35365 CDS	11	1611	0.004	533	0.332	527	0.313	221	0.214	-	-	-	-	-	-	-	-
2307	J05401 CDS	-	X59736 CDS	5	1257	0.026	398	0.533	385	0.464	-	-	-	-	-	-	-	-	-	-
2308	D31815 CDS	U28937 CDS	X69021 CDS	2	897	0.064	265	0.444	259	0.383	-	-	-	-	897	0.027	282	0.120	281	0.102
2309	M81780 CDS	Z14132 CDS	-	7	1875	0.105	518	0.519	497	0.427	-	-	-	-	-	-	-	-	-	-
2310	J04543 CDS	L13129 CDS	-	13	1389	0.043	427	0.499	421	0.454	-	-	300	0.313	-	-	-	-	-	-
2311	M31061 CDS	X07392 CDS	X07944 CDS	14	1383	0.054	417	0.550	411	0.500	-	-	335	0.143	1383	0.014	447	0.197	447	0.197
2312	L07833 CDS	U26176 CDS	M96544 CDS	0	1152	0.078	333	0.537	319	0.440	-	-	-	-	1152	0.021	368	0.154	363	0.137
2313	M82968 CDS	U31992 CDS	-	2	780	0.293	155	0.705	141	0.348	-	-	-	-	-	-	-	-	-	-
2314	J03040 CDS	X04017 CDS	Y13714 CDS	14	906	0.038	279	0.394	279	0.351	-	-	1088	0.416	903	0.008	295	0.143	295	0.143
2315	M24461 CDS	S78114 CDS	-	2	1116	0.165	270	0.495	246	0.326	-	-	354	0.611	-	-	-	-	-	-
2316	L05485 CDS	L40156 CDS	M81231 CDS	2	1122	0.167	280	0.491	261	0.342	-	-	-	-	1122	0.043	344	0.194	340	0.163
2317	M64231 CDS	Z67748 CDS	-	15	906	0.026	286	0.459	279	0.422	-	-	243	0.350	-	-	-	-	-	-
2318	M61877 CDS	U87455 CDS	-	1	7236	0.117	1928	0.566	1812	0.419	-	-	-	-	-	-	-	-	-	-
2319	J05500 CDS	S66283 CDS	-	2	6291	0.058	1880	0.499	1824	0.406	-	-	-	-	-	-	-	-	-	-
2320	M96803 CDS	M74773 CDS	-	16	7080	0.025	2269	0.459	2241	0.419	-	-	-	-	-	-	-	-	-	-
2321	K03218 CDS	M17031 CDS	-	4	1605	0.007	528	0.481	522	0.458	-	-	-	-	-	-	-	-	-	-
2322	M74047 CDS	-	M95058 CDS	0	762	0.135	197	0.549	187	0.426	-	-	759	0.667	-	-	-	-	-	-
2323	M81829 CDS	M81831 CDS	X62314 CDS	0	1173	0.006	386	0.507	382	0.486	-	-	-	-	1173	0.007	385	0.109	383	0.104
2324	M81830 CDS	M81832 CDS	M93273 CDS	1	1107	0.036	346	0.474	341	0.431	-	-	-	-	1107	0.009	362	0.205	362	0.200
2325	L10838 CDS	X91656 CDS	-	18	492	0.000	164	0.353	164	0.353	-	-	-	-	-	-	-	-	-	-
2326	L14865 CDS	U82697 CDS	L04535 CDS	0	1080	0.112	292	0.734	278	0.546	-	-	-	-	1080	0.017	348	0.227	349	0.212
2327	M73489 CDS	-	M55636 CDS	1	3216	0.107	884	0.621	848	0.486	-	-	368	0.471	-	-	-	-	-	-
2328	L78440 CDS	U06923 CDS	-	4	2244	0.029	707	0.522	685	0.461	-	-	-	-	-	-	-	-	-	-
2329	L20320 CDS	U11822 CDS	-	8	1038	0.026	329	0.535	319	0.459	-	-	167	0.180	-	-	-	-	-	-
2330	M95925 CDS	L14935 CDS	-	1	711	0.063	212	0.430	202	0.335	157	0.256	975	0.439	-	-	-	-	-	-
2331	L31573 CDS	-	L05084 CDS	8	1464	0.064	429	0.438	413	0.355	-	-	-	-	-	-	-	-	-	-
2332	L78243 CDS	AF037312 CDS	X97279 CDS	3	4746	0.029	1502	0.417	1484	0.389	-	-	-	-	2049	0.003	679	0.197	674	0.190
2333	J05392 CDS	Z22532 CDS	M81785 CDS	1	927	0.153	236	0.517	222	0.377	206	0.299	1267	0.322	924	0.051	280	0.215	279	0.164
2334	D37933 CDS	D29743 CDS	-	0	864	0.035	270	1.037	263	0.972	-	-	-	-	-	-	-	-	-	-
2335	M55047 CDS	D37792 CDS	-	3	1263	0.011	412	0.434	409	0.422	-	-	1907	0.152	-	-	-	-	-	-
2336	D32046 CDS	L34169 CDS	-	1	1056	0.176	255	0.294	244	0.213	192	0.157	235	0.387	-	-	-	-	-	-
2337	D15056 CDS	D10849 CDS	-	1	1020	0.165	257	0.837	238	0.560	-	-	-	-	-	-	-	-	-	-
2338	D45198 CDS	-	S68589 CDS	6	867	0.029	273	0.323	271	0.285	-	-	335	0.184	-	-	-	-	-	-
2339	L25444 CDS	D49439 CDS	D49446 CDS	5	2031	0.012	661	0.584	644	0.529	-	-	-	-	2031	0.003	673	0.126	672	0.123
2340	M33680 CDS	-	U19894 CDS	15	708	0.037	220	0.549	214	0.487	220	0.824	363	0.444	-	-	-	-	-	-
2341	J00314 CDS	X04663 CDS	AB011679 CDS	19	1332	0.007	439	0.475	439	0.470	-	-	-	-	1332	0.000	444	0.223	444	0.223
2342	L13470 CDS	-	M63991 CDS	3	1218	0.143	313	0.451	292	0.292	-	-	-	-	-	-	-	-	-	-
2343	M34079 CDS	D49686 CDS	U77918 CDS	10	1212	0.007	399	0.470	398	0.463	-	-	-	-	1212	0.005	399	0.212	435	0.185
2344	M80647 CDS	L18868 CDS	D28773 CDS	7	1599	0.118	433	0.500	417	0.390	-	-	-	-	1599	0.069	465	0.117	463	0.095
2345	M62626 CDS	S70632 CDS	-	0	990	0.033	310	0.442	305	0.385	-	-	-	-	-	-	-	-	-	-
2346	L27706 CDS	Z31557 CDS	-	14	1593	0.017	514	0.508	511	0.496	-	-	290	0.600	-	-	-	-	-	-
2347	J04132 CDS	M19729 CDS	-	1	489	-	-	-	-	-	-	-	841	0.600	-	-	-	-	-	-
2348	M21121 CDS	U02298 CDS	-	1	273	-	-	-	-	-	-	-	194	0.558	-	-	-	-	-	-
2349	D50495 CDS	D86081 CDS	D12927 CDS	10	894	0.065	265	0.542	261	0.487	-	-	-	-	894	0.007	294	0.130	295	0.129
2350	M63896 CDS	L13853 CDS	-	2	1233	0.005	407	0.359	408	0.352	248	0.322	1298	0.192	-	-	-	-	-	-
2351	L06139 CDS	X67553 CDS	-	2	3363	0.037	1041	0.432	1030	0.398	-	-	582	0.408	-	-	-	-	-	-
2352	D50863 CDS	-	D50864 CDS	5	1863	0.040	576	0.326	565	0.281	-	-	-	-	-	-	-	-	-	-
2353	M76766 CDS	-	X65948 CDS	12	948	0.001	315	0.496	311	0.473	-	-	254	0.208	-	-	-	-	-	-
2354	J02846 CDS	M57896 CDS	-	4	864	0.357	158	0.743	134	0.392	-	-	773	0.411	-	-	-	-	-	-
2355	L39059 CDS	Y09974 CDS	-	3	2502	0.221	552	0.697	511	0.459	-	-	-	-	-	-	-	-	-	-
2356	L39060 CDS	Y09972 CDS	-	4	1350	0.123	358	0.637	344	0.482	-	-	-	-	-	-	-	-	-	-
2357	J03133 CDS	-	D12768 CDS	2	2088	0.016	672	0.240	667	0.223	-	-	-	-	-	-	-	-	-	-
2358	M55153 CDS	M55154 CDS	-	6	2055	0.097	575	0.599	558	0.482	-	-	1006	0.774	-	-	-	-	-	-
2359	K03222 CDS	M92420 CDS	-	0	477	-	-	-	-	-	-	-	3164	0.572	-	-	-	-	-	-
2360	M19154 CDS	X57413 CDS	-	6	1239	0.023	393	0.460	394	0.455	441	0.315	738	0.246	-	-	-	-	-	-
2361	J03241 CDS	M32745 CDS	U03491 CDS	3	1230	0.012	399	0.329	395	0.312	285	0.166	1048	0.312	1230	0.004	407	0.138	407	0.138
2362	L07594 CDS	AF039601 CDS	M80784 CDS	3	2538	0.100	693	0.538	666	0.438	322	0.952	1019	0.480	2535	0.030	796	0.197	794	0.188
2363	U52246 CDS	S69114 CDS	L09653 CDS	2	1701	0.047	514	0.498	502	0.439	236	0.317	-	-	1701	0.026	540	0.201	531	0.163
2364	M60315 CDS	U73520 CDS	-	1	1527	0.044	467	0.414	457	0.366	-	-	-	-	-	-	-	-	-	-
2365	M77349 CDS	L19932 CDS	-	12	2049	0.050	619	0.443	606	0.404	-	-	608	0.331	-	-	-	-	-	-
2366	L17075 CDS	L48015 CDS	L36088 CDS	3	1503	0.066	445	0.508	423	0.409	233	0.946	159	0.403	1503	0.018	482	0.156	482	0.150
2367	M17262 CDS	X52308 CDS	-	3	1851	0.115	505	0.507	491	0.396	-	-	-	-	-	-	-	-	-	-
2368	L38969 CDS	L24434 CDS	-	8	2868	0.015	928	0.422	913	0.395	-	-	-	-	-	-	-	-	-	-
2369	J02973 CDS	X14432 CDS	-	1	1716	0.217	390	0.774	348	0.484	155	0.561	1563	0.415	-	-	-	-	-	-
2370	J03239 CDS	X07751 CDS	-	8	1356	0.004	448	0.131	447	0.130	-	-	-	-	-	-	-	-	-	-
2371	M62424 CDS	L03529 CDS	M81642 CDS	4	1275	0.132	331	0.698	308	0.470	-	-	1674	0.567	1266	0.046	384	0.211	386	0.184
2372	L12350 CDS	L07803 CDS	-	5	3516	0.066	1035	0.701	992	0.584	214	0.816	370	0.338	-	-	-	-	-	-
2373	M20259 CDS	-	M58404 CDS	15	132	-	-	-	-	-	-	-	246	0.115	-	-	-	-	-	-
2374	M17733 CDS	U38967 CDS	-	17	132	-	-	-	-	-	-	-	320	0.123	-	-	-	-	-	-
2375	M24398 CDS	-	X16481 CDS	0	306	-	-	-	-	-	-	-	483	0.272	-	-	-	-	-	-
2376	J05593 CDS	M82858 CDS	S82718 CDS	5	660	0.012	214	0.380	212	0.348	205	0.339	-	-	660	0.004	218	0.129	217	0.119
2377	J03358 CDS	U76762 CDS	-	1	2466	0.036	762	0.461	742	0.420	-	-	-	-	-	-	-	-	-	-
2378	M15205 CDS	M68489 CDS	-	3	699	0.074	203	0.624	196	0.547	-	-	416	0.915	-	-	-	-	-	-
2379	L10717 CDS	L05631 CDS	-	3	1857	0.033	583	0.508	569	0.434	-	-	-	-	-	-	-	-	-	-
2380	M99435 CDS	U61362 CDS	-	15	2304	0.019	741	0.330	732	0.302	-	-	-	-	-	-	-	-	-	-
2381	M99438 CDS	X73360 CDS	-	4	2313	0.015	749	0.386	737	0.354	-	-	-	-	-	-	-	-	-	-
2382	M99439 CDS	U61363 CDS	-	5	1341	0.010	439	0.377	431	0.346	-	-	-	-	-	-	-	-	-	-
2383	M75165 CDS	X58381 CDS	L00382 CDS	10	852	0.006	280	0.305	278	0.293	-	-	-	-	852	0.003	282	0.110	282	0.110
2384	M33772 CDS	M57590 CDS	-	5	480	0.005	158	0.458	155	0.411	-	-	-	-	-	-	-	-	-	-
2385	M16441 CDS	Y00137 CDS	L00981 CDS	1	606	-	-	-	-	-	-	-	602	0.470	606	0.022	193	0.206	191	0.181
2386	L04270 CDS	L38423 CDS	-	5	1233	0.205	287	0.557	269	0.370	195	0.271	-	-	-	-	-	-	-	-
2387	D38305 CDS	D78382 CDS	-	9	1035	0.024	330	0.348	329	0.313	-	-	-	-	-	-	-	-	-	-
2388	D64110 CDS	Z72000 CDS	-	5	756	0.038	233	0.316	232	0.275	-	-	-	-	-	-	-	-	-	-
2389	M60706 CDS	D10061 CDS	-	5	2295	0.016	741	0.433	739	0.419	-	-	1134	0.064	-	-	-	-	-	-
2390	K03021 CDS	J03520 CDS	-	11	1674	0.124	448	0.799	422	0.619	-	-	750	0.491	-	-	-	-	-	-
2391	L14927 CDS	-	X74807 CDS	0	525	-	-	-	-	-	-	-	161	0.613	-	-	-	-	-	-
2392	M25715 CDS	X60703 CDS	X17396 CDS	0	2742	0.156	683	0.860	630	0.606	-	-	170	0.667	2742	0.030	859	0.168	849	0.147
2393	M73047 CDS	X81323 CDS	U50194 CDS	7	3747	0.021	1201	0.417	1182	0.381	-	-	797	0.291	3747	0.004	1238	0.101	1237	0.101
2394	D17554 CDS	X81987 CDS	X87107 CDS	18	858	0.101	243	0.694	236	0.547	-	-	-	-	831	0.038	260	0.233	260	0.204
2395	L38810 CDS	Z54219 CDS	D83521 CDS	11	1218	0.006	403	0.466	396	0.444	-	-	-	-	1218	0.000	406	0.176	406	0.176
2396	L40407 CDS	U19799 CDS	-	3	1014	0.122	275	0.688	257	0.516	-	-	-	-	-	-	-	-	-	-
2397	M36429 CDS	U34960 CDS	U34959 CDS	12	1020	0.002	338	0.349	338	0.343	-	-	-	-	1020	0.017	327	0.116	326	0.114
2398	M19267 CDS	-	M18135 CDS	13	852	0.003	282	0.286	282	0.283	-	-	472	0.269	-	-	-	-	-	-
2399	M37984 CDS	J04971 CDS	-	4	483	0.003	160	0.481	158	0.453	-	-	173	0.541	-	-	-	-	-	-
2400	M77016 CDS	S76831 CDS	U59241 CDS	3	1077	0.016	347	0.427	343	0.414	-	-	-	-	1077	0.010	353	0.122	353	0.122

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