Substitution rate and gene expression pattern in mammals

Genes 2401 to 2509

                                                                        
NbT:      number of tissues where ESTs have been detected (in human). 
LgCDS:    length of the aligned protein coding sequences (CDS).       
Ka:       non-synonymous substitution rate.                           
LgS:      number of synonymous sites.                                 
Ks:       synonymous substitution rate.                               
LgSnd:    number of synonymous sites after having removed doublet substitutions.                                                               
Ks_nd:    synonymous substitution rate without doublet substitutions. 
Lg5'UTR:  length of the aligned 5'UTRs (*).                    
K 5'UTR:  substitution rate within 5'UTRs (*).                 
Lg3'UTR:  length of the aligned 3'UTRs (*).                    
K 3'UTR:  substitution rate within 3'UTRs (*).                 
                                                                             
   (*) UTR data from Makalowski and Boguski (1998) Proc. Natl. Acad. Sci. USA 95:9407-9412                                        
   (**) When both rat and mouse orthologs are available, human/rodent substitution rates are calculated using mouse.

					Human / Rodent (**)										Mouse / Rat
	Human acc. num.	Mouse acc. num.	Rat acc. num.	NbT	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd	Lg5'UTR	K 5'UTR	Lg3'UTR	K 3'UTR	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd
2401	M19713 CDS	-	M15474 CDS	13	852	0.003	282	0.263	282	0.259	-	-	-	-	-	-	-	-	-	-
2402	L21910 CDS	-	J04993 CDS	3	561	0.012	182	0.437	181	0.410	-	-	-	-	-	-	-	-	-	-
2403	L21715 CDS	J04992 CDS	M73701 CDS	2	546	0.014	176	0.443	175	0.401	-	-	-	-	546	0.005	180	0.116	180	0.101
2404	L18967 CDS	X63349 CDS	-	1	1551	0.094	430	0.610	413	0.478	396	0.273	221	0.624	-	-	-	-	-	-
2405	M63379 CDS	L05670 CDS	M64733 CDS	18	1344	0.143	339	0.526	324	0.422	-	-	242	0.519	1341	0.037	414	0.190	411	0.163
2406	D00596 CDS	M13352 CDS	L12138 CDS	8	921	0.051	277	0.466	271	0.389	-	-	461	0.786	921	0.014	298	0.156	298	0.146
2407	L48546 CDS	U37775 CDS	U24150 CDS	12	5337	0.050	1624	0.576	1567	0.503	-	-	-	-	5337	0.013	1738	0.191	1735	0.183
2408	M32215 CDS	U02602 CDS	M34842 CDS	0	2292	0.072	662	0.462	647	0.414	-	-	-	-	2292	0.031	720	0.218	713	0.205
2409	M86699 CDS	M86377 CDS	-	4	2445	0.141	621	0.535	597	0.417	-	-	318	0.361	-	-	-	-	-	-
2410	L18983 CDS	U11812 CDS	X92563 CDS	2	2922	0.075	850	0.427	819	0.330	-	-	500	0.366	2913	0.034	909	0.157	904	0.132
2411	D50315 CDS	D88159 CDS	D42145 CDS	6	1272	0.010	417	0.519	412	0.494	176	0.377	-	-	1272	0.005	420	0.163	420	0.163
2412	M31551 CDS	X16490 CDS	X64563 CDS	5	1245	0.136	315	0.625	292	0.406	-	-	538	0.485	1245	0.065	362	0.176	355	0.142
2413	D23662 CDS	D10918 CDS	-	14	243	-	-	-	-	-	-	-	236	0.223	-	-	-	-	-	-
2414	M15881 CDS	L33406 CDS	M63510 CDS	0	1911	0.140	490	0.669	455	0.488	-	-	256	0.511	1908	0.060	563	0.171	557	0.134
2415	D45371 CDS	U37222 CDS	-	0	732	0.108	201	0.781	187	0.556	-	-	-	-	-	-	-	-	-	-
2416	L22206 CDS	-	Z22758 CDS	0	1113	0.079	326	0.521	316	0.435	-	-	-	-	-	-	-	-	-	-
2417	M73255 CDS	L22355 CDS	X63722 CDS	3	2217	0.142	560	0.566	527	0.401	-	-	694	0.396	2217	0.077	633	0.223	622	0.188
2418	L06132 CDS	U30840 CDS	-	8	849	0.007	279	0.474	276	0.454	-	-	-	-	-	-	-	-	-	-
2419	L06328 CDS	U30838 CDS	-	15	882	0.044	270	0.314	269	0.277	-	-	-	-	-	-	-	-	-	-
2420	M60450 CDS	U03723 CDS	M32867 CDS	0	1959	0.015	634	0.360	631	0.344	-	-	-	-	1959	0.003	649	0.142	648	0.132
2421	M60451 CDS	L22218 CDS	M27158 CDS	1	1797	0.086	510	0.550	495	0.446	228	0.392	-	-	1797	0.031	564	0.180	562	0.161
2422	L16242 CDS	U85786 CDS	M91808 CDS	2	654	0.017	210	0.446	208	0.425	-	-	586	0.281	654	0.004	216	0.088	216	0.088
2423	M14144 CDS	M26251 CDS	-	15	1398	0.015	452	0.365	450	0.348	-	-	314	0.242	-	-	-	-	-	-
2424	M33308 CDS	L18880 CDS	-	5	3198	0.005	1054	0.379	1043	0.358	-	-	-	-	-	-	-	-	-	-
2425	L40764 CDS	D28132 CDS	U09631 CDS	2	1305	0.078	373	0.734	357	0.603	-	-	-	-	1305	0.011	426	0.118	427	0.117
2426	L10641 CDS	M55413 CDS	M60205 CDS	4	1410	0.137	365	0.589	345	0.470	-	-	170	0.502	1410	0.050	426	0.225	424	0.202
2427	D16532 CDS	L33417 CDS	-	3	2619	0.020	837	0.363	832	0.351	193	0.261	479	0.096	-	-	-	-	-	-
2428	L23205 CDS	-	M97381 CDS	0	1530	0.051	467	0.480	461	0.435	-	-	310	0.135	-	-	-	-	-	-
2429	L27745 CDS	L29346 CDS	L15453 CDS	1	6804	0.020	2182	0.399	2158	0.370	-	-	-	-	6657	0.004	2200	0.128	2199	0.126
2430	M14648 CDS	U14135 CDS	-	2	3129	0.045	962	0.502	929	0.429	-	-	468	0.479	-	-	-	-	-	-
2431	D31833 CDS	-	D45400 CDS	0	1272	0.108	344	0.487	323	0.329	-	-	-	-	-	-	-	-	-	-
2432	L20861 CDS	M89798 CDS	-	0	1092	0.011	358	0.569	352	0.533	-	-	-	-	-	-	-	-	-	-
2433	M80232 CDS	M55512 CDS	X69716 CDS	1	1344	0.020	432	0.390	423	0.338	-	-	-	-	1344	0.003	445	0.119	443	0.115
2434	D14533 CDS	X74345 CDS	-	2	810	0.079	232	0.638	222	0.495	-	-	-	-	-	-	-	-	-	-
2435	M36089 CDS	U02887 CDS	-	8	1887	0.071	544	0.561	529	0.466	165	0.477	-	-	-	-	-	-	-	-
2436	D43642 CDS	D43643 CDS	-	12	1092	0.018	352	0.609	339	0.535	-	-	-	-	-	-	-	-	-	-
2437	D28124 CDS	D50263 CDS	X66872 CDS	1	534	0.035	166	0.417	163	0.370	-	-	1025	0.410	534	0.019	171	0.148	169	0.125
2438	L32832 CDS	D26046 CDS	-	5	11058	0.027	3487	0.372	3439	0.335	-	-	-	-	-	-	-	-	-	-
2439	D26120 CDS	X85802 CDS	-	5	1644	0.005	542	0.314	540	0.305	-	-	-	-	-	-	-	-	-	-
2440	D76435 CDS	D32167 CDS	-	1	1341	0.006	442	0.446	436	0.420	-	-	-	-	-	-	-	-	-	-
2441	L14837 CDS	D14340 CDS	-	7	5196	0.061	1548	0.431	1505	0.358	426	0.211	1392	0.124	-	-	-	-	-	-
2442	M60504 CDS	M20026 CDS	Y10823 CDS	9	1266	0.229	286	0.665	259	0.455	-	-	-	-	1209	0.088	339	0.234	334	0.186
2443	D17570 CDS	D17569 CDS	-	1	1050	0.133	274	0.483	267	0.420	-	-	-	-	-	-	-	-	-	-
2444	X98093 CDS	U53584 CDS	-	6	3651	0.093	1034	0.405	1005	0.299	-	-	-	-	-	-	-	-	-	-
2445	S37730 CDS	L05439 CDS	J04486 CDS	7	915	0.067	267	0.387	255	0.301	-	-	320	0.282	912	0.014	295	0.172	294	0.163
2446	S40369 CDS	D10011 CDS	U08258 CDS	2	2937	0.010	963	0.315	956	0.296	-	-	-	-	2937	0.003	975	0.123	973	0.121
2447	S40706 CDS	X67083 CDS	U30186 CDS	10	501	-	-	-	-	-	-	-	196	0.469	501	0.026	157	0.126	157	0.114
2448	S40719 CDS	X02801 CDS	-	3	1251	0.053	376	0.518	364	0.440	-	-	1361	0.512	-	-	-	-	-	-
2449	S40832 CDS	-	U12428 CDS	0	1161	0.007	381	0.270	381	0.270	-	-	-	-	-	-	-	-	-	-
2450	S43855 CDS	X66196 CDS	-	1	600	0.062	176	0.466	175	0.423	-	-	364	0.527	-	-	-	-	-	-
2451	S45332 CDS	X53081 CDS	-	3	1521	0.106	414	0.545	394	0.440	-	-	-	-	-	-	-	-	-	-
2452	S49378 CDS	M68903 CDS	AF003598 CDS	1	2388	0.078	689	0.513	649	0.411	-	-	226	0.458	1890	0.041	581	0.222	583	0.197
2453	S55606 CDS	L08394 CDS	-	1	531	-	-	-	-	-	-	-	421	0.457	-	-	-	-	-	-
2454	S60110 CDS	D90225 CDS	M55601 CDS	9	504	0.012	164	0.540	160	0.522	261	0.162	-	-	504	0.000	168	0.165	166	0.137
2455	S61044 CDS	U12785 CDS	J03637 CDS	1	1359	0.111	363	0.589	345	0.439	-	-	-	-	1359	0.048	412	0.228	407	0.196
2456	S62076 CDS	U07721 CDS	-	11	1584	0.098	444	0.445	427	0.359	-	-	-	-	-	-	-	-	-	-
2457	S62539 CDS	L24563 CDS	-	2	3687	0.053	1109	0.507	1075	0.437	564	0.259	1051	0.203	-	-	-	-	-	-
2458	S63697 CDS	-	M62641 CDS	3	495	-	-	-	-	-	-	-	184	0.257	-	-	-	-	-	-
2459	S66541 CDS	J02809 CDS	-	4	678	0.072	193	0.277	191	0.232	-	-	438	0.118	-	-	-	-	-	-
2460	S67368 CDS	U14419 CDS	X15467 CDS	0	1422	0.001	473	0.413	467	0.391	-	-	216	0.089	1422	0.000	474	0.130	474	0.130
2461	S67623 CDS	D49438 CDS	X59506 CDS	0	771	0.077	223	0.798	205	0.565	-	-	-	-	771	0.028	242	0.239	481	0.222
2462	S67803 CDS	-	U08257 CDS	0	2868	0.011	934	0.348	924	0.330	-	-	-	-	-	-	-	-	-	-
2463	S68430 CDS	M36411 CDS	-	2	528	0.045	162	0.328	161	0.322	-	-	405	0.621	-	-	-	-	-	-
2464	S68805 CDS	-	U07971 CDS	7	1269	0.024	404	0.387	398	0.349	-	-	-	-	-	-	-	-	-	-
2465	S70290 CDS	U09114 CDS	M29599 CDS	13	1119	0.029	352	0.391	350	0.369	-	-	1395	0.396	1119	0.021	358	0.241	357	0.241
2466	S70330 CDS	D13139 CDS	-	1	1230	0.181	296	0.631	269	0.390	248	0.571	185	0.504	-	-	-	-	-	-
2467	S70612 CDS	X67056 CDS	M88595 CDS	0	1899	0.032	598	0.414	592	0.364	247	1.101	-	-	1899	0.015	616	0.186	610	0.161
2468	S70721 CDS	-	S69329 CDS	1	1047	0.000	349	0.358	349	0.358	-	-	-	-	-	-	-	-	-	-
2469	S71018 CDS	M74227 CDS	-	3	636	0.051	192	0.538	189	0.500	-	-	-	-	-	-	-	-	-	-
2470	S71022 CDS	-	S71021 CDS	17	618	0.097	172	0.522	164	0.406	-	-	-	-	-	-	-	-	-	-
2471	S72481 CDS	U58869 CDS	-	8	777	0.110	214	0.457	206	0.350	-	-	-	-	-	-	-	-	-	-
2472	S73906 CDS	D78349 CDS	U15419 CDS	7	549	-	-	-	-	-	155	0.335	607	0.243	540	0.084	152	0.179	151	0.132
2473	S74017 CDS	U70475 CDS	-	13	1737	0.104	473	0.495	459	0.392	-	-	-	-	-	-	-	-	-	-
2474	S74445 CDS	X51715 CDS	-	2	411	-	-	-	-	-	-	-	249	0.383	-	-	-	-	-	-
2475	S74683 CDS	X95842 CDS	-	0	960	0.121	253	0.589	242	0.484	-	-	-	-	-	-	-	-	-	-
2476	S74774 CDS	M27266 CDS	-	11	1602	0.010	525	0.310	521	0.296	-	-	-	-	-	-	-	-	-	-
2477	S75295 CDS	U34228 CDS	-	8	1614	0.013	523	0.299	522	0.292	-	-	-	-	-	-	-	-	-	-
2478	S75989 CDS	-	M95763 CDS	2	1881	0.028	595	0.529	583	0.491	-	-	-	-	-	-	-	-	-	-
2479	S76617 CDS	M30903 CDS	-	0	1497	0.074	432	0.522	422	0.456	229	0.415	221	0.973	-	-	-	-	-	-
2480	S76965 CDS	M63554 CDS	-	2	228	-	-	-	-	-	-	-	860	0.230	-	-	-	-	-	-
2481	S76992 CDS	U37017 CDS	-	3	2604	0.022	832	0.542	814	0.488	-	-	-	-	-	-	-	-	-	-
2482	S77763 CDS	L09600 CDS	-	3	1119	0.062	332	0.530	321	0.458	-	-	-	-	-	-	-	-	-	-
2483	S77770 CDS	-	X64139 CDS	4	2694	0.035	844	0.441	827	0.391	167	0.247	325	0.281	-	-	-	-	-	-
2484	S78085 CDS	U10903 CDS	M80601 CDS	10	1029	0.095	287	0.574	277	0.437	-	-	-	-	861	0.037	266	0.218	262	0.196
2485	S78203 CDS	-	D63149 CDS	2	2187	0.101	601	0.415	584	0.352	-	-	423	0.528	-	-	-	-	-	-
2486	S78296 CDS	L36390 CDS	-	2	1482	0.065	440	0.380	427	0.332	-	-	-	-	-	-	-	-	-	-
2487	S78569 CDS	U69176 CDS	-	10	5442	0.068	1602	0.515	1551	0.426	-	-	-	-	-	-	-	-	-	-
2488	S80071 CDS	-	M88111 CDS	1	1908	0.012	622	0.382	618	0.373	-	-	-	-	-	-	-	-	-	-
2489	S80562 CDS	-	U06755 CDS	11	987	0.012	320	0.459	316	0.439	-	-	-	-	-	-	-	-	-	-
2490	S80876 CDS	L03547 CDS	-	2	1278	0.057	381	0.537	374	0.463	-	-	-	-	-	-	-	-	-	-
2491	S81003 CDS	X97042 CDS	-	13	462	0.000	154	0.160	154	0.160	-	-	-	-	-	-	-	-	-	-
2492	S81591 CDS	-	L11004 CDS	0	2091	0.010	687	0.022	688	0.008	-	-	-	-	-	-	-	-	-	-
2493	S82178 CDS	X74342 CDS	S67435 CDS	0	849	0.063	248	0.694	242	0.592	-	-	416	0.561	849	0.026	268	0.170	267	0.161
2494	S82496 CDS	-	D78359 CDS	7	1392	0.038	432	0.465	422	0.410	-	-	-	-	-	-	-	-	-	-
2495	S82769 CDS	X59300 CDS	X63324 CDS	0	1401	0.022	446	0.581	435	0.538	-	-	-	-	1401	0.006	461	0.118	461	0.111
2496	S83176 CDS	-	U10354 CDS	0	3234	0.034	1009	0.529	989	0.482	-	-	-	-	-	-	-	-	-	-
2497	S83308 CDS	X65657 CDS	-	0	1041	0.015	337	0.513	335	0.489	-	-	-	-	-	-	-	-	-	-
2498	S85655 CDS	X78682 CDS	M61219 CDS	15	816	0.002	271	0.427	271	0.427	-	-	-	-	816	0.000	272	0.252	272	0.252
2499	S87759 CDS	D28117 CDS	J04503 CDS	4	1146	0.008	375	0.256	373	0.248	171	0.147	-	-	1146	0.005	378	0.151	378	0.149
2500	X60036 CDS	-	M23984 CDS	14	1068	0.044	328	0.419	320	0.353	-	-	-	-	-	-	-	-	-	-
2501	U00672 CDS	L12120 CDS	-	1	1713	0.337	326	0.727	291	0.340	-	-	1673	0.568	-	-	-	-	-	-
2502	U01120 CDS	U00445 CDS	U07993 CDS	1	1071	0.064	314	0.559	298	0.470	-	-	1062	0.363	1071	0.030	335	0.217	332	0.207
2503	U01244 CDS	X70854 CDS	-	12	2106	0.082	597	0.475	580	0.393	-	-	219	0.496	-	-	-	-	-	-
2504	U24166 CDS	U51196 CDS	-	7	804	0.015	260	0.311	257	0.292	-	-	-	-	-	-	-	-	-	-
2505	U58975 CDS	U58974 CDS	-	1	813	0.130	212	0.448	201	0.316	-	-	-	-	-	-	-	-	-	-
2506	U75679 CDS	U75680 CDS	-	3	810	0.064	239	0.646	235	0.582	-	-	-	-	-	-	-	-	-	-
2507	D43747 CDS	-	D38101 CDS	2	6465	0.016	2088	0.387	2062	0.365	-	-	-	-	-	-	-	-	-	-
2508	M60234 CDS	M72332 CDS	L23088 CDS	0	2304	0.166	558	0.615	522	0.446	-	-	600	0.539	2304	0.054	685	0.229	671	0.189
2509	M75866 CDS	M76656 CDS	M63122 CDS	7	1341	0.240	291	0.630	261	0.347	234	0.599	458	0.476	1338	0.089	375	0.193	373	0.154

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