Substitution rate and gene expression pattern in mammals

Genes 701 to 800

                                                                        
NbT:      number of tissues where ESTs have been detected (in human). 
LgCDS:    length of the aligned protein coding sequences (CDS).       
Ka:       non-synonymous substitution rate.                           
LgS:      number of synonymous sites.                                 
Ks:       synonymous substitution rate.                               
LgSnd:    number of synonymous sites after having removed doublet substitutions.                                                               
Ks_nd:    synonymous substitution rate without doublet substitutions. 
Lg5'UTR:  length of the aligned 5'UTRs (*).                    
K 5'UTR:  substitution rate within 5'UTRs (*).                 
Lg3'UTR:  length of the aligned 3'UTRs (*).                    
K 3'UTR:  substitution rate within 3'UTRs (*).                 
                                                                             
   (*) UTR data from Makalowski and Boguski (1998) Proc. Natl. Acad. Sci. USA 95:9407-9412                                        
   (**) When both rat and mouse orthologs are available, human/rodent substitution rates are calculated using mouse.

					Human / Rodent (**)										Mouse / Rat
	Human acc. num.	Mouse acc. num.	Rat acc. num.	NbT	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd	Lg5'UTR	K 5'UTR	Lg3'UTR	K 3'UTR	LgCDS	Ka	LgS	Ks	LgSnd	Ks_nd
701	X06617 CDS	U93864 CDS	K03250 CDS	18	474	0.000	158	0.586	158	0.586	-	-	-	-	474	0.000	158	0.226	158	0.226
702	X87373 CDS	Z83368 CDS	-	19	792	0.004	262	0.595	261	0.589	-	-	-	-	-	-	-	-	-	-
703	X67309 CDS	Z54209 CDS	M29358 CDS	19	747	0.000	249	0.613	243	0.590	-	-	-	-	747	0.000	249	0.232	249	0.232
704	Z25749 CDS	AF043285 CDS	X53377 CDS	14	582	0.000	194	0.593	192	0.576	-	-	-	-	582	0.000	194	0.182	194	0.182
705	X67247 CDS	X73829 CDS	X06423 CDS	17	624	0.000	208	0.480	204	0.455	-	-	-	-	624	0.000	208	0.131	206	0.122
706	X74764 CDS	X76505 CDS	-	4	2457	0.018	788	0.445	784	0.409	350	0.470	192	0.300	-	-	-	-	-	-
707	X59617 CDS	K02927 CDS	-	10	2376	0.015	772	0.440	758	0.412	-	-	447	0.486	-	-	-	-	-	-
708	X59618 CDS	X15666 CDS	-	4	1167	0.046	355	0.463	348	0.438	-	-	853	0.735	-	-	-	-	-	-
709	X59155 CDS	M26687 CDS	D67087 CDS	0	1866	0.073	544	0.542	524	0.458	-	-	-	-	1866	0.022	598	0.172	594	0.153
710	Z75330 CDS	Z75332 CDS	-	3	3774	0.006	1244	0.329	1236	0.319	-	-	-	-	-	-	-	-	-	-
711	X68836 CDS	-	J05571 CDS	5	1185	0.007	389	0.271	387	0.263	-	-	-	-	-	-	-	-	-	-
712	U70976 CDS	M24086 CDS	X15353 CDS	1	1206	0.072	355	0.431	343	0.373	152	0.426	171	0.469	1206	0.014	390	0.172	388	0.160
713	X13697 CDS	L00993 CDS	X67859 CDS	12	1197	0.105	326	0.404	322	0.348	-	-	276	0.223	1197	0.019	382	0.088	396	0.097
714	X79204 CDS	X83542 CDS	X91619 CDS	1	2370	0.062	701	0.497	680	0.412	879	0.221	1212	0.329	2364	0.016	763	0.143	759	0.130
715	X96752 CDS	D29639 CDS	-	6	909	0.056	270	0.657	261	0.572	-	-	-	-	-	-	-	-	-	-
716	X87159 CDS	-	X77932 CDS	1	1914	0.098	529	0.496	495	0.346	-	-	447	0.571	-	-	-	-	-	-
717	X95654 CDS	Z38118 CDS	X67805 CDS	1	2910	0.147	722	0.313	698	0.225	-	-	343	0.347	2769	0.031	864	0.086	879	0.070
718	Z69881 CDS	U49394 CDS	M30581 CDS	1	2997	0.025	948	0.439	933	0.417	-	-	-	-	2997	0.008	982	0.153	978	0.148
719	Z36748 CDS	Z15119 CDS	X66842 CDS	1	1437	0.098	397	0.451	388	0.375	-	-	221	0.618	1437	0.060	425	0.155	419	0.121
720	X87852 CDS	D86950 CDS	-	4	5610	0.031	1768	0.569	1717	0.510	-	-	-	-	-	-	-	-	-	-
721	Y00064 CDS	X53028 CDS	-	4	1986	0.223	433	0.563	407	0.333	-	-	280	0.321	-	-	-	-	-	-
722	X99657 CDS	U58886 CDS	-	2	1056	0.009	345	0.485	345	0.477	-	-	-	-	-	-	-	-	-	-
723	X99664 CDS	U58887 CDS	-	5	1041	0.076	300	0.375	290	0.318	-	-	-	-	-	-	-	-	-	-
724	Y09847 CDS	U46956 CDS	-	3	1734	0.059	527	0.413	520	0.327	-	-	-	-	-	-	-	-	-	-
725	X84347 CDS	U33958 CDS	X89999 CDS	0	1509	0.355	277	0.691	247	0.324	-	-	-	-	1509	0.131	396	0.168	393	0.118
726	X52075 CDS	X17018 CDS	-	0	1152	0.456	196	0.917	165	0.387	-	-	983	0.942	-	-	-	-	-	-
727	X99459 CDS	U91933 CDS	-	4	579	0.000	193	0.433	189	0.412	-	-	-	-	-	-	-	-	-	-
728	X91868 CDS	X80339 CDS	-	1	819	0.011	268	0.283	262	0.252	-	-	-	-	-	-	-	-	-	-
729	U60819 CDS	D88533 CDS	M80804 CDS	7	2046	0.115	545	0.635	523	0.478	-	-	160	0.429	2046	0.054	608	0.260	600	0.222
730	U67243 CDS	U27014 CDS	X59037 CDS	5	1071	0.101	295	0.601	284	0.529	-	-	-	-	1071	0.035	333	0.219	328	0.191
731	Z31560 CDS	X94127 CDS	-	3	951	0.010	311	0.257	310	0.245	-	-	-	-	-	-	-	-	-	-
732	X71135 CDS	X94125 CDS	-	0	1101	0.026	350	0.374	350	0.358	-	-	-	-	-	-	-	-	-	-
733	X70683 CDS	X70298 CDS	-	5	1320	0.077	382	0.615	368	0.450	378	0.594	-	-	-	-	-	-	-	-
734	X68561 CDS	U62522 CDS	U07610 CDS	1	2346	0.016	759	0.259	757	0.249	-	-	447	0.174	2346	0.001	780	0.091	780	0.091
735	X05006 CDS	X72091 CDS	U44845 CDS	5	1428	0.160	355	0.561	336	0.375	-	-	-	-	1413	0.061	418	0.216	414	0.174
736	X69141 CDS	D29016 CDS	-	18	1248	0.065	366	0.609	350	0.479	-	-	313	0.437	-	-	-	-	-	-
737	X73459 CDS	M29264 CDS	-	14	327	-	-	-	-	-	-	-	248	0.537	-	-	-	-	-	-
738	X96667 CDS	X76989 CDS	X76988 CDS	2	1050	0.031	328	0.439	323	0.396	-	-	-	-	1050	0.019	336	0.181	336	0.181
739	U29105 CDS	L36062 CDS	AB001349 CDS	1	852	0.074	246	0.631	235	0.535	-	-	-	-	852	0.019	272	0.265	268	0.246
740	U20521 CDS	S78182 CDS	U50205 CDS	4	882	0.145	225	0.745	208	0.588	-	-	-	-	882	0.060	258	0.286	257	0.253
741	X51417 CDS	S82458 CDS	-	0	1299	0.021	414	0.188	414	0.184	-	-	-	-	-	-	-	-	-	-
742	X66363 CDS	X69025 CDS	-	12	1488	0.013	484	0.290	478	0.266	-	-	-	-	-	-	-	-	-	-
743	X66364 CDS	D29678 CDS	-	8	876	0.001	291	0.395	286	0.367	-	-	-	-	-	-	-	-	-	-
744	X66362 CDS	X69026 CDS	AB005541 CDS	3	1140	0.039	351	0.328	348	0.307	-	-	-	-	1140	0.006	375	0.137	441	0.148
745	U52387 CDS	D86176 CDS	-	5	1617	0.020	518	0.567	510	0.544	-	-	-	-	-	-	-	-	-	-
746	X97630 CDS	X70764 CDS	-	3	2223	0.031	706	0.308	699	0.260	-	-	-	-	-	-	-	-	-	-
747	Y13115 CDS	L29479 CDS	-	5	2769	0.099	761	0.420	736	0.333	-	-	-	-	-	-	-	-	-	-
748	X57766 CDS	Z12604 CDS	U46034 CDS	8	1464	0.103	402	0.511	389	0.413	-	-	729	0.462	1374	0.027	434	0.236	431	0.225
749	X65177 CDS	X62934 CDS	M64236 CDS	0	1221	0.025	385	0.407	379	0.378	198	0.618	300	0.497	1221	0.006	402	0.158	402	0.158
750	X63597 CDS	-	L25926 CDS	0	5460	0.165	1362	0.736	1267	0.519	-	-	444	0.555	-	-	-	-	-	-
751	Z35094 CDS	M14689 CDS	-	5	765	0.210	177	0.902	159	0.540	-	-	-	-	-	-	-	-	-	-
752	X06389 CDS	X95818 CDS	M58396 CDS	1	888	0.029	279	0.387	280	0.373	-	-	-	-	885	0.001	294	0.136	306	0.134
753	X79201 CDS	X93357 CDS	-	4	1161	0.021	369	0.398	367	0.382	-	-	-	-	-	-	-	-	-	-
754	X96783 CDS	-	U26402 CDS	4	1158	0.049	351	0.528	334	0.434	-	-	-	-	-	-	-	-	-	-
755	X67734 CDS	-	M31725 CDS	1	3114	0.052	942	0.467	925	0.402	177	0.464	1072	0.452	-	-	-	-	-	-
756	U79659 CDS	AF001794 CDS	-	4	3864	0.301	765	0.703	704	0.413	-	-	-	-	-	-	-	-	-	-
757	X52882 CDS	D10606 CDS	D90345 CDS	12	1668	0.026	532	0.411	526	0.385	-	-	-	-	1668	0.011	545	0.174	544	0.166
758	X06026 CDS	M18227 CDS	-	2	546	-	-	-	-	-	-	-	247	0.430	-	-	-	-	-	-
759	U34379 CDS	U19607 CDS	-	0	1575	0.096	437	0.723	417	0.613	-	-	551	0.520	-	-	-	-	-	-
760	X94440 CDS	D83596 CDS	-	2	1002	0.035	310	0.611	299	0.552	-	-	-	-	-	-	-	-	-	-
761	X75861 CDS	-	X75855 CDS	15	708	0.050	213	0.656	206	0.568	-	-	-	-	-	-	-	-	-	-
762	X98085 CDS	-	Z18630 CDS	0	4065	0.039	1259	0.477	1227	0.419	-	-	526	0.319	-	-	-	-	-	-
763	X73608 CDS	X92864 CDS	-	9	1317	0.028	415	0.424	409	0.397	-	-	-	-	-	-	-	-	-	-
764	X70910 CDS	X79199 CDS	-	7	606	0.120	159	0.496	151	0.363	-	-	-	-	-	-	-	-	-	-
765	Y08639 CDS	-	L14610 CDS	1	1377	0.017	445	0.254	438	0.217	-	-	-	-	-	-	-	-	-	-
766	X95693 CDS	X94694 CDS	-	0	1347	0.057	400	0.768	383	0.639	-	-	-	-	-	-	-	-	-	-
767	X05839 CDS	M13177 CDS	X52498 CDS	7	1170	0.057	349	0.529	327	0.416	389	0.324	-	-	1167	0.007	384	0.118	382	0.108
768	X89750 CDS	X89749 CDS	-	9	816	0.055	243	0.407	235	0.336	-	-	-	-	-	-	-	-	-	-
769	Z22658 CDS	U25844 CDS	-	13	1125	0.157	287	0.595	265	0.398	-	-	-	-	-	-	-	-	-	-
770	Z19585 CDS	-	X89963 CDS	4	2883	0.040	887	0.519	875	0.475	-	-	-	-	-	-	-	-	-	-
771	X05615 CDS	U76389 CDS	-	2	8283	0.169	2038	0.599	1892	0.418	-	-	-	-	-	-	-	-	-	-
772	X97674 CDS	U39060 CDS	-	2	4386	0.029	1377	0.379	1358	0.353	-	-	-	-	-	-	-	-	-	-
773	U33114 CDS	L19622 CDS	U27201 CDS	8	633	0.016	203	0.455	202	0.446	295	0.419	3478	0.314	633	0.004	209	0.100	208	0.089
774	X03124 CDS	M17243 CDS	L31883 CDS	14	612	-	-	-	-	-	-	-	-	-	612	0.078	176	0.136	174	0.109
775	X04391 CDS	M15177 CDS	D10728 CDS	1	1476	0.252	313	0.640	296	0.397	-	-	466	0.555	1470	0.077	423	0.144	417	0.113
776	X05276 CDS	-	Y00169 CDS	3	744	0.009	243	0.421	242	0.417	-	-	-	-	-	-	-	-	-	-
777	X54729 CDS	S82853 CDS	-	10	633	0.185	152	0.785	142	0.450	-	-	-	-	-	-	-	-	-	-
778	Z15026 CDS	Y00467 CDS	L00981 CDS	2	696	0.126	185	0.487	175	0.350	187	0.357	679	0.354	696	0.028	219	0.165	222	0.150
779	U52165 CDS	M60469 CDS	-	1	1371	0.247	293	0.551	272	0.307	-	-	2106	0.857	-	-	-	-	-	-
780	X69723 CDS	X53333 CDS	L36250 CDS	18	747	0.029	235	0.480	234	0.475	-	-	-	-	747	0.034	231	0.270	230	0.259
781	X06825 CDS	X12650 CDS	L00381 CDS	10	852	0.001	283	0.287	281	0.273	-	-	228	0.328	852	0.000	284	0.097	284	0.097
782	U68162 CDS	X73677 CDS	-	0	1878	0.110	507	0.332	493	0.257	-	-	-	-	-	-	-	-	-	-
783	X15187 CDS	J03297 CDS	-	17	2406	0.018	775	0.485	766	0.445	-	-	283	0.062	-	-	-	-	-	-
784	X78627 CDS	X81464 CDS	-	3	684	0.007	225	0.395	218	0.360	-	-	-	-	-	-	-	-	-	-
785	X55544 CDS	M63725 CDS	-	4	807	0.045	246	0.529	241	0.472	-	-	-	-	-	-	-	-	-	-
786	X90828 CDS	X90829 CDS	-	0	840	0.024	265	0.319	259	0.270	-	-	-	-	-	-	-	-	-	-
787	X04588 CDS	X53753 CDS	L24775 CDS	9	717	0.002	238	0.305	232	0.280	-	-	-	-	717	0.002	238	0.114	247	0.109
788	X04201 CDS	U04541 CDS	-	10	855	0.010	280	0.271	276	0.260	-	-	-	-	-	-	-	-	-	-
789	X01060 CDS	X57349 CDS	-	4	2277	0.139	586	0.476	558	0.351	-	-	-	-	-	-	-	-	-	-
790	X91220 CDS	U61085 CDS	U10097 CDS	0	3006	0.056	903	0.506	879	0.427	-	-	-	-	3006	0.016	968	0.221	964	0.210
791	X01703 CDS	M13446 CDS	-	19	1353	0.004	447	0.321	441	0.292	-	-	-	-	-	-	-	-	-	-
792	X16064 CDS	X06407 CDS	U20525 CDS	19	516	0.020	165	0.403	163	0.375	-	-	208	0.096	516	0.000	172	0.084	172	0.084
793	X72727 CDS	-	D17711 CDS	11	1389	0.006	458	0.266	456	0.246	-	-	1129	0.106	-	-	-	-	-	-
794	X55675 CDS	-	X02741 CDS	2	1362	0.048	416	0.472	401	0.405	-	-	866	0.348	-	-	-	-	-	-
795	X82676 CDS	D31842 CDS	-	2	3555	0.044	1087	0.572	1058	0.510	-	-	-	-	-	-	-	-	-	-
796	X51420 CDS	X03687 CDS	-	4	1581	0.086	450	0.418	441	0.368	-	-	833	0.476	-	-	-	-	-	-
797	U00803 CDS	L36132 CDS	U09583 CDS	0	1515	0.060	450	0.501	436	0.423	401	0.438	885	0.239	1509	0.018	485	0.195	485	0.189
798	U01212 CDS	U01213 CDS	M26926 CDS	0	489	-	-	-	-	-	888	0.549	1648	0.569	489	0.007	160	0.107	159	0.101
799	U01882 CDS	L27990 CDS	-	1	1398	0.201	324	0.572	301	0.355	-	-	195	0.562	-	-	-	-	-	-
800	U02390 CDS	-	U31935 CDS	8	1428	0.075	415	0.626	398	0.530	-	-	-	-	-	-	-	-	-	-

If you have problems or comments...

Back to Query home page