Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
Genome size (bp): 4639675
Number of genes 4242
Oriloc predictions: Origin 3928 kb Terminus 1549 kb
Worning et al., 2006: Origin 3925 kb Terminus 1550 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 3923.969 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 3179.02 kb, 3752.29 kb
Consensus predictions: Origin 3928 kb Terminus 1549 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 789 | NA | 1605 |
| 1753 | NA | 3962 | |
| GC-skew reverse | 2750 | NA | 1603 |
| 3909 | NA | 3858 | |
| AT-skew forward | 1124 | NA | 2428 |
| 1737 | NA | 3911 | |
| AT-skew reverse | 2972 | NA | 2003 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 789 (1605.0095 kb) | leading | 0.093 |
| 790 (1605.34 kb) | 1753 (3962.251 kb) | lagging | -0.008 | |
| 1754 (3964.182 kb) | 2069 (4639.648 kb) | leading | 0.08 | |
| GC-skew reverse | 2070 (0 kb) | 2750 (1602.6805 kb) | leading | 0.005 |
| 2751 (1607.4195 kb) | 3909 (3858.2185 kb) | lagging | -0.085 | |
| 3910 (3859.935 kb) | 4242 (4639.648 kb) | leading | 0.012 | |
| AT-skew forward | 1 (0 kb) | 1124 (2428.296 kb) | NA | -0.177 |
| 1125 (2438.375 kb) | 1737 (3910.9035 kb) | lagging | -0.158 | |
| 1738 (3927.753 kb) | 2069 (4639.648 kb) | leading | -0.199 | |
| AT-skew reverse | 2070 (0 kb) | 2972 (2003.1255 kb) | NA | 0.17 |
| 2973 (2008.0395 kb) | 4242 (4639.648 kb) | NA | 0.2 |