Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
Genome size (bp): 5231428
Number of genes 5378
Oriloc predictions: Origin 4431 kb Terminus 1749 kb
Worning et al., 2006: Origin 4428 kb Terminus 1730 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 3066.718 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 2875.41 kb
Consensus predictions: Origin 4431 kb Terminus 1749 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1045 | NA | 1832 |
| 2250 | NA | 4469 | |
| GC-skew reverse | 3486 | NA | 1778 |
| 4943 | NA | 4377 | |
| AT-skew forward | 1623 | NA | 3227 |
| 2209 | NA | 4382 | |
| AT-skew reverse | 3698 | NA | 2141 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1045 (1832.2345 kb) | leading | 0.1 |
| 1046 (1832.561 kb) | 2250 (4469.186 kb) | lagging | -0.007 | |
| 2251 (4470.2465 kb) | 2633 (5231.401 kb) | leading | 0.092 | |
| GC-skew reverse | 2634 (0 kb) | 3486 (1778.068 kb) | leading | 0.013 |
| 3487 (1779.359 kb) | 4943 (4377.4495 kb) | lagging | -0.092 | |
| 4944 (4378.5445 kb) | 5378 (5231.401 kb) | leading | 0.005 | |
| AT-skew forward | 1 (0 kb) | 1623 (3227.144 kb) | NA | -0.179 |
| 1624 (3228.8315 kb) | 2209 (4381.926 kb) | lagging | -0.146 | |
| 2210 (4386.22 kb) | 2633 (5231.401 kb) | leading | -0.197 | |
| AT-skew reverse | 2634 (0 kb) | 3698 (2140.5635 kb) | NA | 0.163 |
| 3699 (2142.165 kb) | 5378 (5231.401 kb) | NA | 0.195 |