Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella.
Genome size (bp): 2679306
Number of genes 2765
Oriloc predictions: Origin 0 kb Terminus 1784 kb
Worning et al., 2006: Origin 2656 kb Terminus 1785 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2248.809 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.8 kb
Consensus predictions: Origin 0 kb Terminus 1784 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1124 | 0 | 1845 |
| GC-skew reverse | 2228 | 0 | 1752 |
| AT-skew forward | 282 | 0.03556 | 472 |
| 459 | 0.03556 | 709 | |
| 1108 | 0 | 1821 | |
| AT-skew reverse | 2077 | 0.03333 | 1455 |
| 2247 | 0 | 1786 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1124 (1845.445 kb) | leading | 0.191 |
| 1125 (1848.5435 kb) | 1481 (2679.225 kb) | lagging | -0.176 | |
| GC-skew reverse | 1482 (0 kb) | 2228 (1751.6025 kb) | leading | 0.23 |
| 2229 (1752.422 kb) | 2765 (2679.225 kb) | lagging | -0.135 | |
| AT-skew forward | 1 (0 kb) | 282 (471.7725 kb) | leading | -0.369 |
| 283 (474.3305 kb) | 459 (709.152 kb) | leading | -0.23 | |
| 460 (710.744 kb) | 1108 (1821.3865 kb) | leading | -0.372 | |
| 1109 (1821.9925 kb) | 1481 (2679.225 kb) | lagging | 0.046 | |
| AT-skew reverse | 1482 (0 kb) | 2077 (1455.2565 kb) | leading | -0.113 |
| 2078 (1458.997 kb) | 2247 (1785.6935 kb) | leading | 0.036 | |
| 2248 (1786.54 kb) | 2765 (2679.225 kb) | lagging | 0.266 |
More G than C on the leading strand for replication.