Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella.
Genome size (bp): 2519802
Number of genes 2034
Oriloc predictions: Origin 0 kb Terminus 1134 kb
Worning et al., 2006: Origin 2500 kb Terminus 1195 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1622.748 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.81 kb
Consensus predictions: Origin 0 kb Terminus 1134 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 547 | NA | 1211 |
| GC-skew reverse | 1316 | NA | 1024 |
| AT-skew forward | 537 | NA | 1168 |
| AT-skew reverse | 1484 | NA | 1362 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 547 (1211.0005 kb) | leading | 0.232 |
| 548 (1211.8495 kb) | 1000 (2519.722 kb) | lagging | -0.221 | |
| GC-skew reverse | 1001 (0 kb) | 1316 (1024.099 kb) | leading | 0.285 |
| 1317 (1026.3725 kb) | 2034 (2519.722 kb) | lagging | -0.164 | |
| AT-skew forward | 1 (0 kb) | 537 (1168.139 kb) | leading | -0.4 |
| 538 (1173.4895 kb) | 1000 (2519.722 kb) | lagging | 0.086 | |
| AT-skew reverse | 1001 (0 kb) | 1484 (1361.7645 kb) | NA | -0.06 |
| 1485 (1365.3205 kb) | 2034 (2519.722 kb) | lagging | 0.349 |
More G than C on the leading strand for replication.