Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
Genome size (bp): 2961149
Number of genes 2736
Oriloc predictions: Origin 5 kb Terminus 1620 kb
Worning et al., 2006: Origin 7 kb Terminus 1564 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 0.219 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 8.11 kb
Consensus predictions: Origin 5 kb Terminus 1620 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 833 | 0 | 1641 |
| GC-skew reverse | 1982 | 0 | 1624 |
| AT-skew forward | 802 | 0.00667 | 1517 |
| AT-skew reverse | 2161 | 0 | 1987 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 833 (1640.6995 kb) | leading | 0.093 |
| 834 (1641.286 kb) | 1324 (2961.046 kb) | lagging | -0.076 | |
| GC-skew reverse | 1325 (0 kb) | 1982 (1623.6115 kb) | leading | 0.081 |
| 1983 (1624.1205 kb) | 2736 (2961.046 kb) | lagging | -0.086 | |
| AT-skew forward | 1 (0 kb) | 802 (1516.533 kb) | leading | -0.168 |
| 803 (1517.347 kb) | 1324 (2961.046 kb) | lagging | -0.11 | |
| AT-skew reverse | 1325 (0 kb) | 2161 (1986.5735 kb) | NA | 0.108 |
| 2162 (1987.6625 kb) | 2736 (2961.046 kb) | lagging | 0.168 |
More G than C on the leading strand for replication.