Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Genome size (bp): 6264404
Number of genes 5566
Oriloc predictions: Origin 0 kb Terminus 2333 kb
Worning et al., 2006: Origin 6256 kb Terminus 2443 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 6259.524 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.25 kb
Consensus predictions: Origin 0 kb Terminus 2333 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 308 | 0.02333 | 631 |
| 1227 | 0 | 2382 | |
| GC-skew reverse | 3693 | 0 | 2410 |
| AT-skew forward | 1231 | 0 | 2393 |
| AT-skew reverse | 3686 | 0 | 2399 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 308 (631.0985 kb) | leading | -0.121 |
| 309 (640.7055 kb) | 1227 (2381.93 kb) | leading | -0.077 | |
| 1228 (2390.783 kb) | 2744 (6264.361 kb) | lagging | -0.202 | |
| GC-skew reverse | 2745 (0 kb) | 3693 (2409.582 kb) | leading | 0.194 |
| 3694 (2416.1835 kb) | 5566 (6264.361 kb) | lagging | 0.086 | |
| AT-skew forward | 1 (0 kb) | 1231 (2393.409 kb) | leading | -0.169 |
| 1232 (2393.669 kb) | 2744 (6264.361 kb) | lagging | 0.099 | |
| AT-skew reverse | 2745 (0 kb) | 3686 (2398.5895 kb) | leading | -0.077 |
| 3687 (2400.64 kb) | 5566 (6264.361 kb) | lagging | 0.195 |
More G than C on the leading strand for replication.