Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Genome size (bp): 5888780
Number of genes 5133
Oriloc predictions: Origin 9 kb Terminus 2905 kb
Worning et al., 2006: Origin 5887 kb Terminus 2910 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 5813.716 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.31 kb
Consensus predictions: Origin 9 kb Terminus 2905 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 546 | NA | 1077 |
| 1396 | NA | 2919 | |
| 2127 | NA | 4896 | |
| GC-skew reverse | 3527 | NA | 2536 |
| AT-skew forward | 441 | NA | 912 |
| 1213 | NA | 2529 | |
| 1484 | NA | 3149 | |
| AT-skew reverse | 3616 | NA | 2809 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 546 (1077.4725 kb) | leading | -0.06 |
| 547 (1080.877 kb) | 1396 (2918.863 kb) | leading | -0.028 | |
| 1397 (2919.4775 kb) | 2127 (4895.9705 kb) | lagging | -0.162 | |
| 2128 (4896.5205 kb) | 2510 (5888.749 kb) | lagging | -0.148 | |
| GC-skew reverse | 2511 (0 kb) | 3527 (2536.2545 kb) | leading | 0.159 |
| 3528 (2545.412 kb) | 5133 (5888.749 kb) | lagging | 0.049 | |
| AT-skew forward | 1 (0 kb) | 441 (912.075 kb) | leading | -0.23 |
| 442 (913.156 kb) | 1213 (2529.277 kb) | leading | -0.25 | |
| 1214 (2530.3185 kb) | 1484 (3149.134 kb) | NA | -0.156 | |
| 1485 (3150.759 kb) | 2510 (5888.749 kb) | lagging | -0.007 | |
| AT-skew reverse | 2511 (0 kb) | 3616 (2809.3445 kb) | leading | 0.013 |
| 3617 (2810.8415 kb) | 5133 (5888.749 kb) | lagging | 0.229 |
More G than C on the leading strand for replication.