Thermoplasma acidophilum

Rearranged Oriloc output example: Previous Index Next

Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Thermoplasmataceae; Thermoplasma.
Genome size (bp): 1564906
Number of genes 1466
Oriloc predictions: Origin 0 kb Terminus 787 kb
Worning et al., 2006: Origin 1500 kb Terminus 974 kb
Position(s) of the ORC/Cdc6 gene(s): 667.47 kb
Consensus predictions: Origin 0 kb Terminus 787 kb
Significant breakpoints (p-value <0.05):

Breakpoints P-value Chromosome coordinate (kb)

GC-skew forward 355 0.01333 659

GC-skew reverse 1077 0.00667 814

AT-skew reverse 903 0.04 377

Segments:

From (index/coord) To (index/coord) Strand Slope

GC-skew forward 1 (0 kb) 355 (658.852 kb) leading 0.048

356 (660.029 kb) 756 (1564.68 kb) lagging -0.001

GC-skew reverse 757 (0 kb) 1077 (813.6245 kb) leading 0.005

1078 (816.0535 kb) 1466 (1564.68 kb) lagging -0.046

AT-skew reverse 757 (0 kb) 903 (377.294 kb) leading -0.076

904 (379.068 kb) 1466 (1564.68 kb) NA -0.039

More G than C on the leading strand for replication.

	Breakpoints	P-value	Chromosome coordinate (kb)
GC-skew forward	355	0.01333	659
GC-skew reverse	1077	0.00667	814
AT-skew reverse	903	0.04	377

	From (index/coord)	To (index/coord)	Strand	Slope
GC-skew forward	1 (0 kb)	355 (658.852 kb)	leading	0.048
GC-skew forward	356 (660.029 kb)	756 (1564.68 kb)	lagging	-0.001
GC-skew reverse	757 (0 kb)	1077 (813.6245 kb)	leading	0.005
GC-skew reverse	1078 (816.0535 kb)	1466 (1564.68 kb)	lagging	-0.046
AT-skew reverse	757 (0 kb)	903 (377.294 kb)	leading	-0.076
AT-skew reverse	904 (379.068 kb)	1466 (1564.68 kb)	NA	-0.039