Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Lactococcus.
Genome size (bp): 2365589
Number of genes 2321
Oriloc predictions: Origin 0 kb Terminus 1292 kb
Worning et al., 2006: Origin 0 kb Terminus 1265 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1963.115 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.04 kb
Consensus predictions: Origin 0 kb Terminus 1292 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1019 | 0 | 1251 |
| GC-skew reverse | 1481 | 0.00444 | 1280 |
| 2167 | 0 | 2155 | |
| 2193 | 0 | 2170 | |
| AT-skew forward | 1045 | 0 | 1368 |
| AT-skew reverse | 1466 | 0.01333 | 1259 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1019 (1250.7845 kb) | leading | 0.088 |
| 1020 (1252.1205 kb) | 1223 (2359.847 kb) | lagging | -0.164 | |
| GC-skew reverse | 1224 (0 kb) | 1481 (1280.19 kb) | leading | 0.132 |
| 1482 (1281.49 kb) | 2167 (2155.186 kb) | lagging | -0.093 | |
| 2168 (2156.06 kb) | 2193 (2169.7995 kb) | lagging | 0.366 | |
| 2194 (2171.082 kb) | 2321 (2359.847 kb) | lagging | -0.087 | |
| AT-skew forward | 1 (0 kb) | 1045 (1368.153 kb) | leading | -0.072 |
| 1046 (1372.944 kb) | 1223 (2359.847 kb) | lagging | -0.137 | |
| AT-skew reverse | 1224 (0 kb) | 1466 (1259.2965 kb) | leading | 0.133 |
| 1467 (1262.829 kb) | 2321 (2359.847 kb) | lagging | 0.073 |
More G than C on the leading strand for replication.