Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Lawsonia.
Genome size (bp): 1457619
Number of genes 1171
Oriloc predictions: Origin 978 kb Terminus 214 kb
Worning et al., 2006: Origin 978 kb Terminus 218 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 166.882 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.08 kb, 979.98 kb
Consensus predictions: Origin 978 kb Terminus 214 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 88 | 0 | 252 |
| 401 | 0 | 984 | |
| GC-skew reverse | 724 | 0 | 250 |
| 995 | 0 | 979 | |
| AT-skew forward | 83 | 0.14667 | 242 |
| 399 | 0.05333 | 976 | |
| AT-skew reverse | 719 | 0.05667 | 209 |
| 994 | 0.03333 | 977 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 88 (252.029 kb) | NA | 0.287 |
| 89 (255.014 kb) | 401 (983.841 kb) | lagging | -0.15 | |
| 402 (985.3895 kb) | 620 (1457.486 kb) | leading | 0.385 | |
| GC-skew reverse | 621 (0 kb) | 724 (250.2505 kb) | leading | 0.134 |
| 725 (251.6875 kb) | 995 (979.3405 kb) | lagging | -0.361 | |
| 996 (986.582 kb) | 1171 (1457.486 kb) | leading | 0.147 | |
| AT-skew forward | 1 (0 kb) | 83 (241.5065 kb) | NA | -0.094 |
| 84 (242.876 kb) | 399 (976.2955 kb) | lagging | -0.055 | |
| 400 (982.237 kb) | 620 (1457.486 kb) | leading | -0.112 | |
| AT-skew reverse | 621 (0 kb) | 719 (208.786 kb) | leading | 0.052 |
| 720 (211.7655 kb) | 994 (977.403 kb) | lagging | 0.106 | |
| 995 (979.3405 kb) | 1171 (1457.486 kb) | leading | 0.042 |
More G than C on the leading strand for replication.