Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.
Genome size (bp): 4016947
Number of genes 3737
Oriloc predictions: Origin 0 kb Terminus 1891 kb
Worning et al., 2006: Origin 113 kb Terminus 2026 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2914.721 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 6.37 kb, 1885.73 kb
Consensus predictions: Origin 0 kb Terminus 1891 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 920 | 0 | 1910 |
| GC-skew reverse | 2610 | 0 | 1865 |
| AT-skew forward | 932 | 0.02889 | 1929 |
| 1324 | 0.01333 | 2879 | |
| 1374 | 0.00444 | 2996 | |
| AT-skew reverse | 2676 | 0 | 2039 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 920 (1909.5035 kb) | leading | -0.086 |
| 921 (1910.869 kb) | 1827 (4016.702 kb) | lagging | -0.139 | |
| GC-skew reverse | 1828 (0 kb) | 2610 (1864.6755 kb) | leading | 0.133 |
| 2611 (1866.9765 kb) | 3737 (4016.702 kb) | lagging | 0.075 | |
| AT-skew forward | 1 (0 kb) | 932 (1929.154 kb) | leading | -0.38 |
| 933 (1930.629 kb) | 1324 (2879.223 kb) | lagging | -0.264 | |
| 1325 (2883.787 kb) | 1374 (2996.0375 kb) | lagging | -0.127 | |
| 1375 (2997.456 kb) | 1827 (4016.702 kb) | lagging | -0.269 | |
| AT-skew reverse | 1828 (0 kb) | 2676 (2039.4515 kb) | leading | 0.273 |
| 2677 (2041.5365 kb) | 3737 (4016.702 kb) | lagging | 0.373 |
More G than C on the leading strand for replication.