Rearranged Oriloc output example: Previous Index Next




Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus.
Genome size (bp): 2992245
Number of genes 2976
Oriloc predictions: Origin NA Terminus NA
Worning et al., 2006: Origin 639 kb Terminus 2011 kb
Position(s) of the ORC/Cdc6 gene(s): 221.67 kb, 2009.98 kb, 221.67 kb, 2009.98 kb, 221.67 kb, 656.6 kb, 2009.98 kb
Consensus predictions: Origin NA Terminus NA
Significant breakpoints (p-value <0.05):
Breakpoints P-value Chromosome coordinate (kb)
GC-skew forward1315NA2606
GC-skew reverse1787NA551
1878NA657
AT-skew forward431NA863
1375NA2729
AT-skew reverse2950NA2947
Segments:
From (index/coord) To (index/coord) StrandSlope
GC-skew forward 1 (0 kb)1315 (2606.347 kb) NA0.174
1316 (2609.16 kb)1489 (2991.218 kb) NA0.122
GC-skew reverse 1490 (0 kb)1787 (551.459 kb) NA-0.2
1788 (561.0495 kb)1878 (656.881 kb) NA-0.35
1879 (659.107 kb)2976 (2991.218 kb) NA-0.137
AT-skew forward 1 (0 kb)431 (863.096 kb) NA0.069
432 (864.2795 kb)1375 (2729.4155 kb) NA-0.002
1376 (2732.823 kb)1489 (2991.218 kb) NA0.062
AT-skew reverse 1490 (0 kb)2950 (2946.7075 kb) NA-0.057
2951 (2948.603 kb)2976 (2991.218 kb) NA-0.005