Rearranged Oriloc output example: Previous Index Next




Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus.
Genome size (bp): 2694756
Number of genes 2825
Oriloc predictions: Origin NA Terminus NA
Worning et al., 2006: Origin 31 kb Terminus 1910 kb
Position(s) of the ORC/Cdc6 gene(s): 322.84 kb, 473.68 kb, 1216.64 kb, 1712.8 kb, 2602.52 kb
Consensus predictions: Origin NA Terminus NA
Significant breakpoints (p-value <0.05):
Breakpoints P-value Chromosome coordinate (kb)
GC-skew forward983NA1864
GC-skew reverse1696NA464
2637NA2275
AT-skew forward478NA883
527NA970
AT-skew reverse2110NA1240
Segments:
From (index/coord) To (index/coord) StrandSlope
GC-skew forward 1 (0 kb)983 (1863.5835 kb) NA0.188
984 (1865.028 kb)1417 (2692.28 kb) NA0.168
GC-skew reverse 1418 (0 kb)1696 (463.5 kb) NA-0.179
1697 (466.04 kb)2637 (2275.265 kb) NA-0.152
2638 (2276.2035 kb)2825 (2692.28 kb) NA-0.112
AT-skew forward 1 (0 kb)478 (883.174 kb) NA0.028
479 (885.7945 kb)527 (969.599 kb) NA-0.098
528 (975.3355 kb)1417 (2692.28 kb) NA0.013
AT-skew reverse 1418 (0 kb)2110 (1240.487 kb) NA-0.058
2111 (1244.178 kb)2825 (2692.28 kb) NA-0.029