Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Bacillales; Staphylococcus.
Genome size (bp): 2878529
Number of genes 2697
Oriloc predictions: Origin 0 kb Terminus 1454 kb
Worning et al., 2006: Origin 0 kb Terminus 1458 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2168.866 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.2 kb, 1794.39 kb
Consensus predictions: Origin 0 kb Terminus 1454 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1009 | NA | 1478 |
| GC-skew reverse | 1704 | NA | 1479 |
| 2525 | NA | 2608 | |
| AT-skew forward | 516 | NA | 836 |
| 976 | NA | 1417 | |
| AT-skew reverse | 1680 | NA | 1394 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1009 (1478.3295 kb) | leading | 0.138 |
| 1010 (1479.216 kb) | 1330 (2878.315 kb) | lagging | -0.143 | |
| GC-skew reverse | 1331 (0 kb) | 1704 (1478.6635 kb) | leading | 0.137 |
| 1705 (1484.9635 kb) | 2525 (2607.6535 kb) | lagging | -0.124 | |
| 2526 (2608.868 kb) | 2697 (2878.315 kb) | lagging | -0.171 | |
| AT-skew forward | 1 (0 kb) | 516 (835.8935 kb) | leading | 0.001 |
| 517 (836.629 kb) | 976 (1417.0815 kb) | leading | 0.018 | |
| 977 (1417.552 kb) | 1330 (2878.315 kb) | lagging | -0.052 | |
| AT-skew reverse | 1331 (0 kb) | 1680 (1394.2145 kb) | leading | 0.032 |
| 1681 (1398.36 kb) | 2697 (2878.315 kb) | lagging | -0.004 |
More G than C on the leading strand for replication.