Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Bacillales; Staphylococcus.
Genome size (bp): 2820462
Number of genes 2632
Oriloc predictions: Origin 0 kb Terminus 1380 kb
Worning et al., 2006: Origin 1 kb Terminus 1410 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 0.194 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.2 kb, 140.35 kb, 140.72 kb, 1757.01 kb
Consensus predictions: Origin 0 kb Terminus 1380 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 967 | NA | 1403 |
| GC-skew reverse | 1598 | NA | 1393 |
| 2464 | NA | 2551 | |
| AT-skew forward | 729 | NA | 1091 |
| 926 | NA | 1336 | |
| AT-skew reverse | 1542 | NA | 1049 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 967 (1402.7245 kb) | leading | 0.147 |
| 968 (1403.7465 kb) | 1289 (2820.248 kb) | lagging | -0.14 | |
| GC-skew reverse | 1290 (0 kb) | 1598 (1393.182 kb) | leading | 0.169 |
| 1599 (1393.988 kb) | 2464 (2551.077 kb) | lagging | -0.13 | |
| 2465 (2552.543 kb) | 2632 (2820.248 kb) | lagging | -0.168 | |
| AT-skew forward | 1 (0 kb) | 729 (1090.7335 kb) | leading | -0.002 |
| 730 (1092.3935 kb) | 926 (1335.765 kb) | leading | 0.023 | |
| 927 (1336.1865 kb) | 1289 (2820.248 kb) | lagging | -0.05 | |
| AT-skew reverse | 1290 (0 kb) | 1542 (1048.8695 kb) | leading | 0.035 |
| 1543 (1055.846 kb) | 2632 (2820.248 kb) | lagging | -0.004 |
More G than C on the leading strand for replication.