Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.
Genome size (bp): 4773551
Number of genes 4176
Oriloc predictions: Origin 51 kb Terminus 2912 kb
Worning et al., 2006: Origin 4764 kb Terminus 2868 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2413.881 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 4745.23 kb
Consensus predictions: Origin 0 kb Terminus 2912 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1497 | NA | 2928 |
| GC-skew reverse | 3302 | NA | 2883 |
| AT-skew forward | 1473 | NA | 2852 |
| AT-skew reverse | 3299 | NA | 2875 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1497 (2928.328 kb) | leading | -0.031 |
| 1498 (2929.384 kb) | 2257 (4771.757 kb) | lagging | -0.143 | |
| GC-skew reverse | 2258 (0 kb) | 3302 (2883.0435 kb) | leading | 0.139 |
| 3303 (2886.208 kb) | 4176 (4771.757 kb) | lagging | 0.044 | |
| AT-skew forward | 1 (0 kb) | 1473 (2852.0855 kb) | leading | -0.226 |
| 1474 (2853.914 kb) | 2257 (4771.757 kb) | lagging | 0.017 | |
| AT-skew reverse | 2258 (0 kb) | 3299 (2875.2195 kb) | leading | -0.047 |
| 3300 (2878.3485 kb) | 4176 (4771.757 kb) | lagging | 0.239 |
More G than C on the leading strand for replication.