Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.
Genome size (bp): 5339179
Number of genes 4993
Oriloc predictions: Origin 38 kb Terminus 2999 kb
Worning et al., 2006: Origin 5332 kb Terminus 2977 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1806.278 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 5310.85 kb
Consensus predictions: Origin 0 kb Terminus 2999 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1602 | 0 | 2973 |
| GC-skew reverse | 3811 | 0 | 2986 |
| AT-skew forward | 1617 | 0 | 3005 |
| AT-skew reverse | 3830 | 0 | 3034 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1602 (2973.384 kb) | leading | -0.028 |
| 1603 (2973.803 kb) | 2616 (5337.385 kb) | lagging | -0.138 | |
| GC-skew reverse | 2617 (0 kb) | 3811 (2985.65 kb) | leading | 0.141 |
| 3812 (2987.0905 kb) | 4993 (5337.385 kb) | lagging | 0.042 | |
| AT-skew forward | 1 (0 kb) | 1617 (3004.985 kb) | leading | -0.217 |
| 1618 (3005.221 kb) | 2616 (5337.385 kb) | lagging | 0.028 | |
| AT-skew reverse | 2617 (0 kb) | 3830 (3034.317 kb) | leading | -0.053 |
| 3831 (3044.481 kb) | 4993 (5337.385 kb) | lagging | 0.232 |
More G than C on the leading strand for replication.