Rearranged Oriloc output example: Previous Index Next
Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.
Genome size (bp): 2843201
Number of genes 2767
Oriloc predictions: Origin 397 kb Terminus 1592 kb
Worning et al., 2006: Origin 325 kb Terminus 1641 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 256.83 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.87 kb
Consensus predictions: Origin 397 kb Terminus 1592 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 103 | 0 | 277 |
| 877 | 0 | 1666 | |
| GC-skew reverse | 1491 | 0.03778 | 325 |
| 2145 | 0 | 1813 | |
| 2224 | 0 | 1880 | |
| AT-skew forward | 257 | 0.02 | 608 |
| 836 | 0.01333 | 1593 | |
| AT-skew reverse | 1520 | 0.01333 | 404 |
| 2034 | 0.00667 | 1654 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 103 (277.024 kb) | lagging | -0.144 |
| 104 (282.626 kb) | 877 (1666.271 kb) | leading | 0.016 | |
| 878 (1676.4335 kb) | 1314 (2842.762 kb) | lagging | -0.117 | |
| GC-skew reverse | 1315 (0 kb) | 1491 (325.1615 kb) | lagging | -0.07 |
| 1492 (326.072 kb) | 2145 (1813.0125 kb) | NA | 0.054 | |
| 2146 (1813.528 kb) | 2224 (1879.7535 kb) | lagging | -0.328 | |
| 2225 (1880.813 kb) | 2767 (2842.762 kb) | lagging | 0.002 | |
| AT-skew forward | 1 (0 kb) | 257 (607.776 kb) | NA | -0.005 |
| 258 (612.606 kb) | 836 (1592.8755 kb) | leading | -0.096 | |
| 837 (1595.2325 kb) | 1314 (2842.762 kb) | lagging | 0.041 | |
| AT-skew reverse | 1315 (0 kb) | 1520 (404.11 kb) | lagging | 0.059 |
| 1521 (406.8645 kb) | 2034 (1654.093 kb) | leading | -0.036 | |
| 2035 (1654.5635 kb) | 2767 (2842.762 kb) | lagging | 0.085 |
More G than C on the leading strand for replication - for forward encoded genes.