Rearranged Oriloc output example: Previous Index Next




Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Coxiellaceae; Coxiella.
Genome size (bp): 1995281
Number of genes 2016
Oriloc predictions: Origin 0 kb Terminus 861 kb
Worning et al., 2006: Origin 36 kb Terminus 861 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1080.164 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.82 kb
Consensus predictions: Origin 0 kb Terminus 861 kb
Significant breakpoints (p-value <0.05):
Breakpoints P-value Chromosome coordinate (kb)
GC-skew forward5390850
GC-skew reverse13870868
Segments:
From (index/coord) To (index/coord) StrandSlope
GC-skew forward 1 (0 kb)539 (849.53 kb) leading0.093
540 (849.848 kb)1057 (1995.196 kb) lagging-0.069
GC-skew reverse 1058 (0 kb)1387 (868.404 kb) leading0.102
1388 (873.233 kb)2016 (1995.196 kb) lagging-0.068
More G than C on the leading strand for replication.