Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.
Genome size (bp): 2184406
Number of genes 2040
Oriloc predictions: Origin 239 kb Terminus 1290 kb
Worning et al., 2006: Origin 250 kb Terminus 1286 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1605.75 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 528.38 kb
Consensus predictions: Origin 220 kb Terminus 1290 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 194 | NA | 502 |
| 582 | NA | 1255 | |
| GC-skew reverse | 1079 | NA | 245 |
| 1578 | NA | 1282 | |
| AT-skew forward | 189 | NA | 497 |
| 591 | NA | 1302 | |
| AT-skew reverse | 1080 | NA | 246 |
| 1593 | NA | 1310 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 194 (502.309 kb) | NA | -0.163 |
| 195 (503.3815 kb) | 582 (1254.9275 kb) | leading | -0.017 | |
| 583 (1262.2445 kb) | 916 (2184.369 kb) | lagging | -0.251 | |
| GC-skew reverse | 917 (0 kb) | 1079 (245.05 kb) | lagging | -0.016 |
| 1080 (246.0505 kb) | 1578 (1282.228 kb) | leading | 0.273 | |
| 1579 (1282.9745 kb) | 2040 (2184.369 kb) | lagging | 0.044 | |
| AT-skew forward | 1 (0 kb) | 189 (496.5965 kb) | NA | 0.034 |
| 190 (498.018 kb) | 591 (1302.1965 kb) | leading | -0.086 | |
| 592 (1304.272 kb) | 916 (2184.369 kb) | lagging | 0.064 | |
| AT-skew reverse | 917 (0 kb) | 1080 (246.0505 kb) | lagging | 0.122 |
| 1081 (247.772 kb) | 1593 (1309.8255 kb) | leading | -0.119 | |
| 1594 (1313.208 kb) | 2040 (2184.369 kb) | lagging | 0.063 |
More G than C on the leading strand for replication.