Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.
Genome size (bp): 2272360
Number of genes 2063
Oriloc predictions: Origin 12 kb Terminus 1246 kb
Worning et al., 2006: Origin 14 kb Terminus 1233 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1520.715 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 2005.17 kb
Consensus predictions: Origin 12 kb Terminus 1246 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 660 | NA | 1225 |
| GC-skew reverse | 1592 | NA | 1197 |
| AT-skew forward | 118 | NA | 201 |
| 662 | NA | 1234 | |
| AT-skew reverse | 1623 | NA | 1249 |
| 1958 | NA | 2033 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 660 (1224.997 kb) | leading | -0.024 |
| 661 (1229.8305 kb) | 1099 (2272.24 kb) | lagging | -0.231 | |
| GC-skew reverse | 1100 (0 kb) | 1592 (1196.904 kb) | leading | 0.262 |
| 1593 (1198.027 kb) | 2063 (2272.24 kb) | lagging | 0.052 | |
| AT-skew forward | 1 (0 kb) | 118 (200.6545 kb) | leading | -0.11 |
| 119 (201.7115 kb) | 662 (1234.485 kb) | leading | -0.079 | |
| 663 (1236.6185 kb) | 1099 (2272.24 kb) | lagging | 0.074 | |
| AT-skew reverse | 1100 (0 kb) | 1623 (1248.7775 kb) | leading | -0.102 |
| 1624 (1251.696 kb) | 1958 (2032.6005 kb) | lagging | 0.071 | |
| 1959 (2033.2735 kb) | 2063 (2272.24 kb) | lagging | 0.001 |
More G than C on the leading strand for replication.