Rearranged Oriloc output example: Previous Index Next




Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.
Genome size (bp): 4809037
Number of genes 4381
Oriloc predictions: Origin 3764 kb Terminus 1486 kb
Worning et al., 2006: Origin 3761 kb Terminus 1488 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 3765.123 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 2573.94 kb, 3805.83 kb
Consensus predictions: Origin 3764 kb Terminus 1486 kb
Significant breakpoints (p-value <0.05):
Breakpoints P-value Chromosome coordinate (kb)
GC-skew forward557NA1048
GC-skew reverse2767NA1470
3947NA3644
Segments:
From (index/coord) To (index/coord) StrandSlope
GC-skew forward 1 (0 kb)557 (1047.817 kb) leading0.119
558 (1048.4955 kb)2210 (4809.01 kb) NA0.031
GC-skew reverse 2211 (0 kb)2767 (1470.295 kb) leading0.023
2768 (1474.614 kb)3947 (3643.8785 kb) lagging-0.112
3948 (3650.833 kb)4381 (4809.01 kb) leading-0.02
More G than C on the leading strand for replication - for reverse encoded genes.