Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Bacillales; Listeriaceae; Listeria.
Genome size (bp): 2944528
Number of genes 2846
Oriloc predictions: Origin 0 kb Terminus 1485 kb
Worning et al., 2006: Origin 4 kb Terminus 1441 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1.724 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1 kb, 1599.12 kb
Consensus predictions: Origin 0 kb Terminus 1485 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 964 | NA | 1272 |
| GC-skew reverse | 1770 | NA | 1534 |
| AT-skew reverse | 1619 | NA | 1136 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 964 (1272.272 kb) | leading | 0.079 |
| 965 (1272.6315 kb) | 1379 (2944.341 kb) | NA | -0.096 | |
| GC-skew reverse | 1380 (0 kb) | 1770 (1534.315 kb) | leading | 0.113 |
| 1771 (1536.545 kb) | 2846 (2944.341 kb) | lagging | -0.077 | |
| AT-skew reverse | 1380 (0 kb) | 1619 (1136.1715 kb) | leading | 0.066 |
| 1620 (1138.225 kb) | 2846 (2944.341 kb) | lagging | -0.011 |
More G than C on the leading strand for replication - for reverse encoded genes.