Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.
Genome size (bp): 3716413
Number of genes 3435
Oriloc predictions: Origin 3 kb Terminus 2010 kb
Worning et al., 2006: Origin 340 kb Terminus 1967 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 0.025 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 2809.6 kb, 3715.49 kb
Consensus predictions: Origin 3 kb Terminus 2010 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1098 | NA | 2069 |
| GC-skew reverse | 1876 | NA | 393 |
| 2436 | NA | 1993 | |
| AT-skew forward | 1078 | NA | 2020 |
| AT-skew reverse | 2431 | NA | 1959 |
| 3242 | NA | 3395 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1098 (2068.864 kb) | leading | -0.023 |
| 1099 (2069.8825 kb) | 1691 (3716.276 kb) | lagging | -0.099 | |
| GC-skew reverse | 1692 (0 kb) | 1876 (393.127 kb) | leading | 0.112 |
| 1877 (399.491 kb) | 2436 (1992.57 kb) | leading | 0.109 | |
| 2437 (1993.7535 kb) | 3435 (3716.276 kb) | lagging | 0.027 | |
| AT-skew forward | 1 (0 kb) | 1078 (2020.4355 kb) | leading | -0.279 |
| 1079 (2026.753 kb) | 1691 (3716.276 kb) | lagging | -0.019 | |
| AT-skew reverse | 1692 (0 kb) | 2431 (1958.9675 kb) | leading | -0.022 |
| 2432 (1972.5205 kb) | 3242 (3395.4825 kb) | lagging | 0.246 | |
| 3243 (3396.38 kb) | 3435 (3716.276 kb) | lagging | 0.167 |
More G than C on the leading strand for replication.