Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.
Genome size (bp): 2580084
Number of genes 2313
Oriloc predictions: Origin 2444 kb Terminus 923 kb
Worning et al., 2006: Origin 2440 kb Terminus 937 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 558.31 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): NA
Consensus predictions: Origin 2444 kb Terminus 923 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 453 | NA | 909 |
| GC-skew reverse | 1581 | NA | 937 |
| AT-skew forward | 448 | NA | 900 |
| AT-skew reverse | 1572 | NA | 907 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 453 (908.9935 kb) | leading | 0.014 |
| 454 (912.1325 kb) | 1189 (2580.08 kb) | lagging | -0.086 | |
| GC-skew reverse | 1190 (0 kb) | 1581 (936.93 kb) | leading | 0.081 |
| 1582 (938.614 kb) | 2313 (2580.08 kb) | lagging | -0.01 | |
| AT-skew forward | 1 (0 kb) | 448 (899.7585 kb) | leading | -0.244 |
| 449 (901.051 kb) | 1189 (2580.08 kb) | lagging | -0.096 | |
| AT-skew reverse | 1190 (0 kb) | 1572 (906.9975 kb) | leading | 0.074 |
| 1573 (910.4345 kb) | 2313 (2580.08 kb) | lagging | 0.227 |
More G than C on the leading strand for replication.