Methanopyrus kandleri

Rearranged Oriloc output example: Previous Index Next

Archaea; Euryarchaeota; Methanopyri; Methanopyrales; Methanopyraceae; Methanopyrus.
Genome size (bp): 1694969
Number of genes 1675
Oriloc predictions: Origin 562 kb Terminus 1361 kb
Worning et al., 2006: Origin 492 kb Terminus 1211 kb
Position(s) of the ORC/Cdc6 gene(s): NA
Consensus predictions: Origin 562 kb Terminus 1361 kb
Significant breakpoints (p-value <0.05):

Breakpoints P-value Chromosome coordinate (kb)

AT-skew forward 292 0.00667 571

672 0.02 1380

AT-skew reverse 1205 0.00333 675

1389 0.05667 1100

Segments:

From (index/coord) To (index/coord) Strand Slope

AT-skew forward 1 (0 kb) 292 (570.704 kb) lagging 0.146

293 (577.134 kb) 672 (1380.07 kb) leading -0.001

673 (1380.964 kb) 834 (1694.497 kb) lagging 0.125

AT-skew reverse 835 (0 kb) 1205 (675.1585 kb) NA -0.016

1206 (676.4235 kb) 1389 (1099.722 kb) leading -0.144

1390 (1102.377 kb) 1675 (1694.497 kb) NA -0.058

More T than A on the leading strand for replication - for forward encoded genes.

	Breakpoints	P-value	Chromosome coordinate (kb)
AT-skew forward	292	0.00667	571
AT-skew forward	672	0.02	1380
AT-skew reverse	1205	0.00333	675
AT-skew reverse	1389	0.05667	1100

	From (index/coord)	To (index/coord)	Strand	Slope
AT-skew forward	1 (0 kb)	292 (570.704 kb)	lagging	0.146
	293 (577.134 kb)	672 (1380.07 kb)	leading	-0.001
	673 (1380.964 kb)	834 (1694.497 kb)	lagging	0.125
AT-skew reverse	835 (0 kb)	1205 (675.1585 kb)	NA	-0.016
	1206 (676.4235 kb)	1389 (1099.722 kb)	leading	-0.144
	1390 (1102.377 kb)	1675 (1694.497 kb)	NA	-0.058